Experiment: R2A with bromate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5188 and Atu5189 overlap by 4 nucleotides Atu5189 and Atu5190 are separated by 114 nucleotides Atu5190 and Atu5191 are separated by 160 nucleotides
Atu5188: Atu5188 - zinc-binding dehydrogenase, at 184,097 to 185,083
Atu5188
Atu5189: Atu5189 - hypothetical protein, at 185,080 to 185,412
Atu5189
Atu5190: Atu5190 - hypothetical protein, at 185,527 to 186,249
Atu5190
Atu5191: Atu5191 - hypothetical protein, at 186,410 to 187,534
Atu5191
Position (kb) 185
186
187 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 184.568 kb on - strand, within Atu5188 at 184.599 kb on + strand, within Atu5188 at 184.606 kb on + strand, within Atu5188 at 184.607 kb on - strand, within Atu5188 at 184.607 kb on - strand, within Atu5188 at 184.736 kb on - strand, within Atu5188 at 184.764 kb on + strand, within Atu5188 at 184.784 kb on - strand, within Atu5188 at 184.784 kb on - strand, within Atu5188 at 184.897 kb on - strand, within Atu5188 at 184.897 kb on - strand, within Atu5188 at 185.000 kb on - strand at 185.064 kb on + strand at 185.093 kb on + strand at 185.130 kb on + strand, within Atu5189 at 185.161 kb on - strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.169 kb on - strand, within Atu5189 at 185.171 kb on - strand, within Atu5189 at 185.178 kb on + strand, within Atu5189 at 185.221 kb on + strand, within Atu5189 at 185.235 kb on + strand, within Atu5189 at 185.243 kb on - strand, within Atu5189 at 185.291 kb on + strand, within Atu5189 at 185.314 kb on + strand, within Atu5189 at 185.415 kb on - strand at 185.415 kb on - strand at 185.461 kb on + strand at 185.531 kb on + strand at 185.536 kb on + strand at 185.539 kb on - strand at 185.544 kb on - strand at 185.579 kb on - strand at 185.660 kb on + strand, within Atu5190 at 185.728 kb on - strand, within Atu5190 at 185.751 kb on + strand, within Atu5190 at 185.765 kb on + strand, within Atu5190 at 185.841 kb on + strand, within Atu5190 at 185.864 kb on - strand, within Atu5190 at 185.875 kb on - strand, within Atu5190 at 185.888 kb on + strand, within Atu5190 at 186.020 kb on - strand, within Atu5190 at 186.057 kb on + strand, within Atu5190 at 186.060 kb on - strand, within Atu5190 at 186.060 kb on - strand, within Atu5190 at 186.161 kb on + strand, within Atu5190 at 186.161 kb on + strand, within Atu5190 at 186.169 kb on - strand, within Atu5190 at 186.169 kb on - strand, within Atu5190 at 186.223 kb on + strand at 186.223 kb on + strand at 186.231 kb on - strand at 186.288 kb on + strand at 186.288 kb on + strand at 186.315 kb on - strand at 186.526 kb on - strand, within Atu5191 at 186.526 kb on - strand, within Atu5191 at 186.545 kb on + strand, within Atu5191 at 186.632 kb on - strand, within Atu5191 at 186.689 kb on + strand, within Atu5191 at 186.696 kb on - strand, within Atu5191 at 186.748 kb on + strand, within Atu5191 at 186.788 kb on + strand, within Atu5191 at 186.832 kb on - strand, within Atu5191 at 186.834 kb on - strand, within Atu5191 at 186.875 kb on - strand, within Atu5191 at 186.974 kb on + strand, within Atu5191 at 186.995 kb on + strand, within Atu5191 at 187.096 kb on - strand, within Atu5191 at 187.098 kb on - strand, within Atu5191 at 187.164 kb on + strand, within Atu5191 at 187.164 kb on + strand, within Atu5191 at 187.164 kb on + strand, within Atu5191 at 187.164 kb on - strand, within Atu5191 at 187.174 kb on - strand, within Atu5191 at 187.181 kb on + strand, within Atu5191
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with bromate 5 mM remove 184,568 - Atu5188 0.48 -1.0 184,599 + Atu5188 0.51 +0.1 184,606 + Atu5188 0.52 +0.7 184,607 - Atu5188 0.52 +0.4 184,607 - Atu5188 0.52 -0.5 184,736 - Atu5188 0.65 +0.3 184,764 + Atu5188 0.68 -0.6 184,784 - Atu5188 0.70 -1.3 184,784 - Atu5188 0.70 -0.4 184,897 - Atu5188 0.81 -1.2 184,897 - Atu5188 0.81 -0.4 185,000 - -0.5 185,064 + -0.0 185,093 + +0.1 185,130 + Atu5189 0.15 +0.8 185,161 - Atu5189 0.24 -0.4 185,163 + Atu5189 0.25 +0.1 185,163 + Atu5189 0.25 +0.5 185,163 + Atu5189 0.25 +0.4 185,163 + Atu5189 0.25 +0.3 185,163 + Atu5189 0.25 +0.7 185,169 - Atu5189 0.27 -0.5 185,171 - Atu5189 0.27 +0.3 185,178 + Atu5189 0.29 +1.2 185,221 + Atu5189 0.42 +0.3 185,235 + Atu5189 0.47 +1.2 185,243 - Atu5189 0.49 -0.0 185,291 + Atu5189 0.63 -0.1 185,314 + Atu5189 0.70 +0.7 185,415 - +0.1 185,415 - +0.9 185,461 + +0.9 185,531 + -0.7 185,536 + +0.0 185,539 - -0.2 185,544 - +1.3 185,579 - +0.5 185,660 + Atu5190 0.18 +2.2 185,728 - Atu5190 0.28 -0.1 185,751 + Atu5190 0.31 +1.8 185,765 + Atu5190 0.33 +0.2 185,841 + Atu5190 0.43 +0.1 185,864 - Atu5190 0.47 +0.0 185,875 - Atu5190 0.48 -1.0 185,888 + Atu5190 0.50 +1.3 186,020 - Atu5190 0.68 +0.7 186,057 + Atu5190 0.73 +2.1 186,060 - Atu5190 0.74 +0.6 186,060 - Atu5190 0.74 +1.0 186,161 + Atu5190 0.88 +0.5 186,161 + Atu5190 0.88 +0.0 186,169 - Atu5190 0.89 -0.5 186,169 - Atu5190 0.89 +0.7 186,223 + +0.1 186,223 + +2.0 186,231 - +0.1 186,288 + +0.6 186,288 + +0.7 186,315 - +1.1 186,526 - Atu5191 0.10 +1.3 186,526 - Atu5191 0.10 +0.1 186,545 + Atu5191 0.12 +0.4 186,632 - Atu5191 0.20 -3.1 186,689 + Atu5191 0.25 +0.4 186,696 - Atu5191 0.25 +0.0 186,748 + Atu5191 0.30 +0.4 186,788 + Atu5191 0.34 +0.3 186,832 - Atu5191 0.38 -0.1 186,834 - Atu5191 0.38 -0.2 186,875 - Atu5191 0.41 -0.8 186,974 + Atu5191 0.50 +0.7 186,995 + Atu5191 0.52 +0.8 187,096 - Atu5191 0.61 -0.3 187,098 - Atu5191 0.61 +0.1 187,164 + Atu5191 0.67 +1.1 187,164 + Atu5191 0.67 +4.4 187,164 + Atu5191 0.67 +1.1 187,164 - Atu5191 0.67 +0.3 187,174 - Atu5191 0.68 +0.5 187,181 + Atu5191 0.69 -0.2
Or see this region's nucleotide sequence