Experiment: R2A with bromate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5065 and Atu5066 are separated by 72 nucleotides Atu5066 and Atu5067 are separated by 298 nucleotides
Atu5065: Atu5065 - non-heme chloroperoxidase, at 63,472 to 64,293
Atu5065
Atu5066: Atu5066 - hypothetical protein, at 64,366 to 65,133
Atu5066
Atu5067: Atu5067 - dihydrodipicolinate synthase, at 65,432 to 66,325
Atu5067
Position (kb) 64
65
66 Strain fitness (log2 ratio) -1
0
1
2
3 at 63.496 kb on - strand at 63.516 kb on + strand at 63.535 kb on - strand at 63.636 kb on + strand, within Atu5065 at 63.655 kb on + strand, within Atu5065 at 63.663 kb on - strand, within Atu5065 at 63.706 kb on + strand, within Atu5065 at 63.714 kb on - strand, within Atu5065 at 63.867 kb on + strand, within Atu5065 at 63.904 kb on + strand, within Atu5065 at 64.019 kb on + strand, within Atu5065 at 64.019 kb on + strand, within Atu5065 at 64.024 kb on + strand, within Atu5065 at 64.027 kb on - strand, within Atu5065 at 64.027 kb on - strand, within Atu5065 at 64.027 kb on - strand, within Atu5065 at 64.088 kb on - strand, within Atu5065 at 64.111 kb on - strand, within Atu5065 at 64.111 kb on - strand, within Atu5065 at 64.127 kb on + strand, within Atu5065 at 64.175 kb on + strand, within Atu5065 at 64.180 kb on + strand, within Atu5065 at 64.193 kb on - strand, within Atu5065 at 64.236 kb on + strand at 64.236 kb on + strand at 64.236 kb on + strand at 64.257 kb on + strand at 64.277 kb on + strand at 64.277 kb on + strand at 64.277 kb on + strand at 64.278 kb on - strand at 64.290 kb on - strand at 64.295 kb on - strand at 64.381 kb on - strand at 64.465 kb on + strand, within Atu5066 at 64.473 kb on - strand, within Atu5066 at 64.473 kb on - strand, within Atu5066 at 64.478 kb on + strand, within Atu5066 at 64.478 kb on + strand, within Atu5066 at 64.491 kb on - strand, within Atu5066 at 64.493 kb on + strand, within Atu5066 at 64.501 kb on - strand, within Atu5066 at 64.507 kb on + strand, within Atu5066 at 64.507 kb on + strand, within Atu5066 at 64.515 kb on - strand, within Atu5066 at 64.515 kb on - strand, within Atu5066 at 64.547 kb on - strand, within Atu5066 at 64.547 kb on - strand, within Atu5066 at 64.677 kb on + strand, within Atu5066 at 64.721 kb on - strand, within Atu5066 at 64.738 kb on - strand, within Atu5066 at 64.811 kb on - strand, within Atu5066 at 64.813 kb on - strand, within Atu5066 at 64.815 kb on + strand, within Atu5066 at 64.869 kb on + strand, within Atu5066 at 64.902 kb on + strand, within Atu5066 at 64.902 kb on + strand, within Atu5066 at 64.902 kb on + strand, within Atu5066 at 64.902 kb on + strand, within Atu5066 at 64.902 kb on + strand, within Atu5066 at 64.910 kb on - strand, within Atu5066 at 64.922 kb on - strand, within Atu5066 at 64.962 kb on + strand, within Atu5066 at 65.144 kb on + strand at 65.180 kb on - strand at 65.209 kb on + strand at 65.216 kb on - strand at 65.217 kb on - strand at 65.308 kb on - strand at 65.389 kb on + strand at 65.427 kb on - strand at 65.512 kb on - strand at 65.567 kb on - strand, within Atu5067 at 65.570 kb on + strand, within Atu5067 at 65.582 kb on + strand, within Atu5067 at 65.611 kb on - strand, within Atu5067 at 65.624 kb on + strand, within Atu5067 at 65.656 kb on + strand, within Atu5067 at 65.658 kb on - strand, within Atu5067 at 65.697 kb on + strand, within Atu5067 at 65.740 kb on - strand, within Atu5067 at 65.769 kb on + strand, within Atu5067 at 65.772 kb on - strand, within Atu5067 at 65.825 kb on + strand, within Atu5067 at 65.870 kb on + strand, within Atu5067 at 65.905 kb on + strand, within Atu5067 at 65.928 kb on - strand, within Atu5067 at 65.942 kb on - strand, within Atu5067 at 65.954 kb on - strand, within Atu5067 at 65.965 kb on + strand, within Atu5067 at 65.973 kb on - strand, within Atu5067 at 66.035 kb on - strand, within Atu5067 at 66.050 kb on + strand, within Atu5067 at 66.076 kb on + strand, within Atu5067 at 66.092 kb on - strand, within Atu5067
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with bromate 5 mM remove 63,496 - +0.1 63,516 + +0.8 63,535 - +0.4 63,636 + Atu5065 0.20 +0.3 63,655 + Atu5065 0.22 +0.1 63,663 - Atu5065 0.23 -0.6 63,706 + Atu5065 0.28 -0.4 63,714 - Atu5065 0.29 +0.6 63,867 + Atu5065 0.48 +1.3 63,904 + Atu5065 0.53 -0.5 64,019 + Atu5065 0.67 +0.6 64,019 + Atu5065 0.67 +1.3 64,024 + Atu5065 0.67 +0.9 64,027 - Atu5065 0.68 +0.3 64,027 - Atu5065 0.68 -1.0 64,027 - Atu5065 0.68 +0.6 64,088 - Atu5065 0.75 +0.4 64,111 - Atu5065 0.78 -0.3 64,111 - Atu5065 0.78 -0.4 64,127 + Atu5065 0.80 +0.0 64,175 + Atu5065 0.86 -0.1 64,180 + Atu5065 0.86 +0.6 64,193 - Atu5065 0.88 +2.2 64,236 + -0.4 64,236 + +0.1 64,236 + +1.3 64,257 + +1.2 64,277 + +0.9 64,277 + -0.4 64,277 + -1.0 64,278 - +0.7 64,290 - +0.7 64,295 - -1.1 64,381 - +0.1 64,465 + Atu5066 0.13 +0.8 64,473 - Atu5066 0.14 +1.1 64,473 - Atu5066 0.14 +0.5 64,478 + Atu5066 0.15 -0.8 64,478 + Atu5066 0.15 -0.2 64,491 - Atu5066 0.16 +0.3 64,493 + Atu5066 0.17 -0.8 64,501 - Atu5066 0.18 +0.1 64,507 + Atu5066 0.18 -0.5 64,507 + Atu5066 0.18 -0.5 64,515 - Atu5066 0.19 -0.3 64,515 - Atu5066 0.19 -0.2 64,547 - Atu5066 0.24 -0.2 64,547 - Atu5066 0.24 -0.7 64,677 + Atu5066 0.40 +1.3 64,721 - Atu5066 0.46 -0.1 64,738 - Atu5066 0.48 -0.8 64,811 - Atu5066 0.58 +1.1 64,813 - Atu5066 0.58 -1.0 64,815 + Atu5066 0.58 +0.3 64,869 + Atu5066 0.65 -0.5 64,902 + Atu5066 0.70 -0.0 64,902 + Atu5066 0.70 -0.4 64,902 + Atu5066 0.70 -0.1 64,902 + Atu5066 0.70 -0.5 64,902 + Atu5066 0.70 +0.4 64,910 - Atu5066 0.71 -0.5 64,922 - Atu5066 0.72 -0.7 64,962 + Atu5066 0.78 +0.2 65,144 + -0.4 65,180 - +0.2 65,209 + +0.7 65,216 - +0.1 65,217 - -0.3 65,308 - -0.1 65,389 + -0.4 65,427 - -0.2 65,512 - -0.0 65,567 - Atu5067 0.15 -0.6 65,570 + Atu5067 0.15 -1.3 65,582 + Atu5067 0.17 +0.6 65,611 - Atu5067 0.20 +0.1 65,624 + Atu5067 0.21 +0.9 65,656 + Atu5067 0.25 +0.1 65,658 - Atu5067 0.25 -0.0 65,697 + Atu5067 0.30 +2.9 65,740 - Atu5067 0.34 -0.6 65,769 + Atu5067 0.38 +0.6 65,772 - Atu5067 0.38 -0.3 65,825 + Atu5067 0.44 +0.4 65,870 + Atu5067 0.49 -0.1 65,905 + Atu5067 0.53 +0.2 65,928 - Atu5067 0.55 +0.1 65,942 - Atu5067 0.57 +0.9 65,954 - Atu5067 0.58 -0.1 65,965 + Atu5067 0.60 -0.1 65,973 - Atu5067 0.61 +0.5 66,035 - Atu5067 0.67 +0.1 66,050 + Atu5067 0.69 -0.2 66,076 + Atu5067 0.72 +0.5 66,092 - Atu5067 0.74 +0.1
Or see this region's nucleotide sequence