Strain Fitness in Agrobacterium fabrum C58 around Atu4127

Experiment: R2A with bromate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with bromate 5 mM
1,244,500	-				-0.1
1,244,511	-				+0.2
1,244,535	-				+0.6
1,244,688	+		Atu4126	0.25	+0.4
1,244,688	+		Atu4126	0.25	-0.4
1,244,696	-		Atu4126	0.26	-0.2
1,244,733	+		Atu4126	0.30	-1.4
1,244,827	+		Atu4126	0.40	-0.8
1,244,853	+		Atu4126	0.43	+0.2
1,244,856	-		Atu4126	0.44	+1.3
1,244,856	-		Atu4126	0.44	+0.3
1,244,856	-		Atu4126	0.44	+0.3
1,244,856	-		Atu4126	0.44	-0.4
1,244,862	+		Atu4126	0.44	+0.2
1,244,951	+		Atu4126	0.54	+0.7
1,244,996	-		Atu4126	0.59	-0.8
1,244,996	-		Atu4126	0.59	-0.3
1,245,025	+		Atu4126	0.63	-1.6
1,245,077	-		Atu4126	0.69	-0.3
1,245,077	-		Atu4126	0.69	-0.1
1,245,097	+		Atu4126	0.71	+0.5
1,245,105	-		Atu4126	0.72	-0.4
1,245,147	+		Atu4126	0.76	-0.4
1,245,155	-		Atu4126	0.77	-0.1
1,245,200	-		Atu4126	0.82	-0.3
1,245,213	-		Atu4126	0.84	-0.4
1,245,218	-		Atu4126	0.84	-0.3
1,245,235	+		Atu4126	0.86	+0.1
1,245,243	-		Atu4126	0.87	-0.2
1,245,256	-		Atu4126	0.89	+1.8
1,245,270	-				-1.2
1,245,275	-				+0.3
1,245,306	+				-0.2
1,245,314	-				+0.6
1,245,359	+				-0.0
1,245,367	-				-0.2
1,245,367	-				-0.7
1,245,428	+				-1.2
1,245,525	-		Atu4127	0.17	-0.9
1,245,635	-		Atu4127	0.28	-0.4
1,245,657	+		Atu4127	0.30	+0.2
1,245,851	-		Atu4127	0.49	-1.2
1,245,880	-		Atu4127	0.52	-0.4
1,245,881	+		Atu4127	0.52	-1.0
1,245,891	+		Atu4127	0.53	-0.8
1,245,966	-		Atu4127	0.60	+0.1
1,246,110	+		Atu4127	0.75	+0.0
1,246,197	+		Atu4127	0.83	+0.1
1,246,269	-				-0.4
1,246,269	-				-0.4
1,246,378	+				+0.9
1,246,452	+				+0.2
1,246,495	-				+2.3
1,246,529	-				+0.5
1,246,693	-		Atu4128	0.16	-0.3
1,246,718	+		Atu4128	0.17	+0.6
1,246,741	+		Atu4128	0.19	+0.4
1,246,741	+		Atu4128	0.19	-0.1
1,246,741	+		Atu4128	0.19	+0.7
1,246,746	+		Atu4128	0.19	+0.5
1,246,901	-		Atu4128	0.29	+0.4
1,246,953	+		Atu4128	0.32	+0.5
1,246,976	-		Atu4128	0.34	+0.2
1,246,977	-		Atu4128	0.34	-0.2
1,247,080	-		Atu4128	0.40	+0.5
1,247,115	+		Atu4128	0.42	+0.1
1,247,127	-		Atu4128	0.43	-1.1
1,247,181	-		Atu4128	0.46	+0.3
1,247,217	+		Atu4128	0.49	+0.6
1,247,249	+		Atu4128	0.51	-0.3
1,247,249	+		Atu4128	0.51	+0.1
1,247,284	+		Atu4128	0.53	-0.3
1,247,327	+		Atu4128	0.56	-0.3
1,247,333	+		Atu4128	0.56	+0.6