Experiment: R2A with bromate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3869 and Atu3870 are separated by 60 nucleotides Atu3870 and Atu3871 are separated by 107 nucleotides
Atu3869: Atu3869 - ABC transporter permease, at 962,082 to 963,704
Atu3869
Atu3870: Atu3870 - D-lactate dehydrogenase, at 963,765 to 964,778
Atu3870
Atu3871: Atu3871 - L-lactate dehydrogenase, at 964,886 to 966,031
Atu3871
Position (kb) 963
964
965 Strain fitness (log2 ratio) -2
-1
0
1 at 962.793 kb on - strand, within Atu3869 at 962.878 kb on - strand, within Atu3869 at 962.919 kb on - strand, within Atu3869 at 962.935 kb on + strand, within Atu3869 at 962.943 kb on + strand, within Atu3869 at 962.951 kb on - strand, within Atu3869 at 962.980 kb on + strand, within Atu3869 at 962.999 kb on + strand, within Atu3869 at 963.050 kb on - strand, within Atu3869 at 963.077 kb on + strand, within Atu3869 at 963.086 kb on - strand, within Atu3869 at 963.186 kb on + strand, within Atu3869 at 963.307 kb on + strand, within Atu3869 at 963.307 kb on + strand, within Atu3869 at 963.307 kb on + strand, within Atu3869 at 963.315 kb on - strand, within Atu3869 at 963.315 kb on - strand, within Atu3869 at 963.474 kb on + strand, within Atu3869 at 963.488 kb on + strand, within Atu3869 at 963.524 kb on + strand, within Atu3869 at 963.524 kb on + strand, within Atu3869 at 963.563 kb on - strand at 963.596 kb on + strand at 963.671 kb on - strand at 963.693 kb on - strand at 963.708 kb on - strand at 963.708 kb on - strand at 963.792 kb on + strand at 963.800 kb on - strand at 963.986 kb on - strand, within Atu3870 at 963.991 kb on - strand, within Atu3870 at 964.028 kb on + strand, within Atu3870 at 964.032 kb on + strand, within Atu3870 at 964.032 kb on + strand, within Atu3870 at 964.032 kb on + strand, within Atu3870 at 964.060 kb on + strand, within Atu3870 at 964.063 kb on - strand, within Atu3870 at 964.084 kb on + strand, within Atu3870 at 964.092 kb on + strand, within Atu3870 at 964.128 kb on + strand, within Atu3870 at 964.136 kb on - strand, within Atu3870 at 964.226 kb on - strand, within Atu3870 at 964.310 kb on + strand, within Atu3870 at 964.313 kb on + strand, within Atu3870 at 964.313 kb on + strand, within Atu3870 at 964.316 kb on - strand, within Atu3870 at 964.319 kb on + strand, within Atu3870 at 964.321 kb on + strand, within Atu3870 at 964.327 kb on - strand, within Atu3870 at 964.327 kb on - strand, within Atu3870 at 964.340 kb on + strand, within Atu3870 at 964.341 kb on - strand, within Atu3870 at 964.351 kb on - strand, within Atu3870 at 964.365 kb on + strand, within Atu3870 at 964.411 kb on + strand, within Atu3870 at 964.490 kb on + strand, within Atu3870 at 964.497 kb on + strand, within Atu3870 at 964.505 kb on - strand, within Atu3870 at 964.536 kb on - strand, within Atu3870 at 964.553 kb on - strand, within Atu3870 at 964.679 kb on - strand at 964.731 kb on + strand at 964.731 kb on + strand at 964.755 kb on - strand at 964.765 kb on - strand at 964.778 kb on + strand at 964.778 kb on + strand at 964.786 kb on - strand at 964.823 kb on + strand at 964.908 kb on - strand at 964.934 kb on + strand at 965.061 kb on - strand, within Atu3871 at 965.113 kb on + strand, within Atu3871 at 965.338 kb on + strand, within Atu3871 at 965.354 kb on - strand, within Atu3871 at 965.361 kb on - strand, within Atu3871 at 965.362 kb on + strand, within Atu3871 at 965.467 kb on - strand, within Atu3871 at 965.472 kb on - strand, within Atu3871 at 965.601 kb on + strand, within Atu3871 at 965.626 kb on + strand, within Atu3871
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with bromate 5 mM remove 962,793 - Atu3869 0.44 +0.1 962,878 - Atu3869 0.49 +0.6 962,919 - Atu3869 0.52 +0.0 962,935 + Atu3869 0.53 +0.3 962,943 + Atu3869 0.53 +0.5 962,951 - Atu3869 0.54 +0.1 962,980 + Atu3869 0.55 +0.4 962,999 + Atu3869 0.57 -0.5 963,050 - Atu3869 0.60 -0.3 963,077 + Atu3869 0.61 +0.3 963,086 - Atu3869 0.62 +0.3 963,186 + Atu3869 0.68 -0.6 963,307 + Atu3869 0.75 -0.1 963,307 + Atu3869 0.75 -0.8 963,307 + Atu3869 0.75 +0.3 963,315 - Atu3869 0.76 +0.1 963,315 - Atu3869 0.76 -0.1 963,474 + Atu3869 0.86 +0.4 963,488 + Atu3869 0.87 +0.6 963,524 + Atu3869 0.89 -0.4 963,524 + Atu3869 0.89 +1.3 963,563 - +0.6 963,596 + -1.4 963,671 - +0.2 963,693 - -0.5 963,708 - +0.6 963,708 - -0.2 963,792 + -1.8 963,800 - +0.1 963,986 - Atu3870 0.22 +0.2 963,991 - Atu3870 0.22 +0.7 964,028 + Atu3870 0.26 -0.0 964,032 + Atu3870 0.26 +0.0 964,032 + Atu3870 0.26 +0.2 964,032 + Atu3870 0.26 -0.2 964,060 + Atu3870 0.29 +0.4 964,063 - Atu3870 0.29 -1.5 964,084 + Atu3870 0.31 +0.2 964,092 + Atu3870 0.32 +0.2 964,128 + Atu3870 0.36 +0.0 964,136 - Atu3870 0.37 -0.0 964,226 - Atu3870 0.45 -0.3 964,310 + Atu3870 0.54 +0.4 964,313 + Atu3870 0.54 -0.4 964,313 + Atu3870 0.54 -0.3 964,316 - Atu3870 0.54 -0.5 964,319 + Atu3870 0.55 -0.6 964,321 + Atu3870 0.55 -0.7 964,327 - Atu3870 0.55 -0.7 964,327 - Atu3870 0.55 -0.0 964,340 + Atu3870 0.57 -0.7 964,341 - Atu3870 0.57 +0.0 964,351 - Atu3870 0.58 -0.6 964,365 + Atu3870 0.59 -0.8 964,411 + Atu3870 0.64 -0.2 964,490 + Atu3870 0.71 -0.1 964,497 + Atu3870 0.72 -0.4 964,505 - Atu3870 0.73 +0.0 964,536 - Atu3870 0.76 -1.3 964,553 - Atu3870 0.78 +0.0 964,679 - +1.3 964,731 + +1.3 964,731 + +0.4 964,755 - +1.4 964,765 - +0.5 964,778 + -0.2 964,778 + +0.6 964,786 - +0.3 964,823 + -0.7 964,908 - -0.1 964,934 + +0.7 965,061 - Atu3871 0.15 -1.8 965,113 + Atu3871 0.20 -0.5 965,338 + Atu3871 0.39 -0.4 965,354 - Atu3871 0.41 +0.1 965,361 - Atu3871 0.41 -0.3 965,362 + Atu3871 0.42 +1.3 965,467 - Atu3871 0.51 -0.6 965,472 - Atu3871 0.51 -0.8 965,601 + Atu3871 0.62 +0.6 965,626 + Atu3871 0.65 +0.1
Or see this region's nucleotide sequence