Experiment: R2A with bromate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3456 and Atu3457 overlap by 1 nucleotides Atu3457 and Atu3458 are separated by 4 nucleotides Atu3458 and Atu3459 overlap by 1 nucleotides
Atu3456: Atu3456 - ABC transporter permease, at 504,657 to 505,415
Atu3456
Atu3457: Atu3457 - ABC transporter permease, at 505,415 to 506,251
Atu3457
Atu3458: Atu3458 - ABC transporter permease, at 506,256 to 507,143
Atu3458
Atu3459: Atu3459 - ABC transporter permease, at 507,143 to 508,165
Atu3459
Position (kb) 506
507
508 Strain fitness (log2 ratio) -1
0
1 at 505.379 kb on - strand at 505.434 kb on - strand at 505.435 kb on + strand at 505.448 kb on + strand at 505.676 kb on + strand, within Atu3457 at 505.788 kb on - strand, within Atu3457 at 505.912 kb on - strand, within Atu3457 at 505.932 kb on - strand, within Atu3457 at 505.932 kb on - strand, within Atu3457 at 505.955 kb on - strand, within Atu3457 at 506.009 kb on - strand, within Atu3457 at 506.010 kb on - strand, within Atu3457 at 506.114 kb on + strand, within Atu3457 at 506.114 kb on + strand, within Atu3457 at 506.160 kb on - strand, within Atu3457 at 506.185 kb on + strand at 506.221 kb on + strand at 506.252 kb on + strand at 506.324 kb on + strand at 506.379 kb on - strand, within Atu3458 at 506.388 kb on - strand, within Atu3458 at 506.398 kb on - strand, within Atu3458 at 506.482 kb on + strand, within Atu3458 at 506.558 kb on - strand, within Atu3458 at 506.563 kb on - strand, within Atu3458 at 506.563 kb on - strand, within Atu3458 at 506.567 kb on + strand, within Atu3458 at 506.574 kb on - strand, within Atu3458 at 506.574 kb on - strand, within Atu3458 at 506.597 kb on + strand, within Atu3458 at 506.616 kb on - strand, within Atu3458 at 506.616 kb on - strand, within Atu3458 at 506.653 kb on - strand, within Atu3458 at 506.684 kb on + strand, within Atu3458 at 506.687 kb on - strand, within Atu3458 at 506.692 kb on - strand, within Atu3458 at 506.720 kb on + strand, within Atu3458 at 506.853 kb on + strand, within Atu3458 at 506.883 kb on - strand, within Atu3458 at 507.228 kb on + strand at 507.238 kb on - strand at 507.296 kb on + strand, within Atu3459 at 507.314 kb on - strand, within Atu3459 at 507.362 kb on + strand, within Atu3459 at 507.390 kb on + strand, within Atu3459 at 507.395 kb on + strand, within Atu3459 at 507.397 kb on + strand, within Atu3459 at 507.405 kb on - strand, within Atu3459 at 507.469 kb on + strand, within Atu3459 at 507.499 kb on - strand, within Atu3459 at 507.521 kb on - strand, within Atu3459 at 507.563 kb on - strand, within Atu3459 at 507.643 kb on - strand, within Atu3459 at 507.676 kb on - strand, within Atu3459 at 507.708 kb on + strand, within Atu3459 at 507.711 kb on - strand, within Atu3459 at 507.747 kb on - strand, within Atu3459 at 507.754 kb on + strand, within Atu3459 at 507.808 kb on - strand, within Atu3459 at 507.824 kb on + strand, within Atu3459 at 507.832 kb on - strand, within Atu3459 at 507.858 kb on + strand, within Atu3459 at 508.008 kb on - strand, within Atu3459 at 508.058 kb on + strand, within Atu3459
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with bromate 5 mM remove 505,379 - -0.0 505,434 - -0.5 505,435 + -0.3 505,448 + -0.3 505,676 + Atu3457 0.31 +0.5 505,788 - Atu3457 0.45 +0.2 505,912 - Atu3457 0.59 +0.4 505,932 - Atu3457 0.62 +0.3 505,932 - Atu3457 0.62 -1.0 505,955 - Atu3457 0.65 +0.2 506,009 - Atu3457 0.71 -0.3 506,010 - Atu3457 0.71 +0.3 506,114 + Atu3457 0.84 -0.1 506,114 + Atu3457 0.84 +0.8 506,160 - Atu3457 0.89 +0.1 506,185 + +0.1 506,221 + +0.3 506,252 + +0.4 506,324 + +0.0 506,379 - Atu3458 0.14 -0.1 506,388 - Atu3458 0.15 +0.2 506,398 - Atu3458 0.16 -0.3 506,482 + Atu3458 0.25 +0.4 506,558 - Atu3458 0.34 -0.4 506,563 - Atu3458 0.35 +0.2 506,563 - Atu3458 0.35 +0.8 506,567 + Atu3458 0.35 +0.2 506,574 - Atu3458 0.36 -0.1 506,574 - Atu3458 0.36 -0.4 506,597 + Atu3458 0.38 -0.2 506,616 - Atu3458 0.41 +0.5 506,616 - Atu3458 0.41 -0.8 506,653 - Atu3458 0.45 +0.4 506,684 + Atu3458 0.48 +0.1 506,687 - Atu3458 0.49 +0.2 506,692 - Atu3458 0.49 +0.4 506,720 + Atu3458 0.52 +1.6 506,853 + Atu3458 0.67 -0.8 506,883 - Atu3458 0.71 +0.3 507,228 + +0.2 507,238 - +0.5 507,296 + Atu3459 0.15 -0.1 507,314 - Atu3459 0.17 +0.6 507,362 + Atu3459 0.21 +0.9 507,390 + Atu3459 0.24 -0.2 507,395 + Atu3459 0.25 +0.3 507,397 + Atu3459 0.25 +1.2 507,405 - Atu3459 0.26 +0.1 507,469 + Atu3459 0.32 +1.2 507,499 - Atu3459 0.35 +0.1 507,521 - Atu3459 0.37 -0.3 507,563 - Atu3459 0.41 -0.2 507,643 - Atu3459 0.49 -0.1 507,676 - Atu3459 0.52 +1.1 507,708 + Atu3459 0.55 +0.8 507,711 - Atu3459 0.56 -0.2 507,747 - Atu3459 0.59 +0.3 507,754 + Atu3459 0.60 +0.3 507,808 - Atu3459 0.65 -0.1 507,824 + Atu3459 0.67 +1.0 507,832 - Atu3459 0.67 +1.0 507,858 + Atu3459 0.70 -1.2 508,008 - Atu3459 0.85 -1.7 508,058 + Atu3459 0.89 +0.5
Or see this region's nucleotide sequence