Strain Fitness in Agrobacterium fabrum C58 around Atu2572

Experiment: R2A with bromate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with bromate 5 mM
2,541,428	+		Atu2569	0.83	+0.3
2,541,437	-		Atu2569	0.84	-0.4
2,541,501	-		Atu2569	0.87	+0.1
2,541,502	-		Atu2569	0.87	+1.9
2,541,539	+		Atu2569	0.89	-0.0
2,541,548	+				-0.3
2,541,556	-				+0.1
2,541,558	-				-0.4
2,541,566	+				-0.2
2,541,595	+				+0.2
2,541,597	+				+0.0
2,541,685	+				-0.2
2,541,818	-				-0.1
2,541,831	+				+0.1
2,541,854	+				+0.6
2,541,921	-				+0.2
2,541,923	+				-1.3
2,541,952	-				-0.3
2,541,987	+				-1.4
2,542,213	+		Atu2571	0.37	+0.1
2,542,311	-		Atu2571	0.76	-0.3
2,542,314	+		Atu2571	0.77	-0.3
2,542,322	-		Atu2571	0.80	-0.0
2,542,322	-		Atu2571	0.80	-0.1
2,542,342	-		Atu2571	0.88	-0.1
2,542,342	-		Atu2571	0.88	+0.3
2,542,381	+				+0.0
2,542,381	+				-0.5
2,542,402	-				+0.4
2,542,402	-				+0.5
2,542,404	-				+0.1
2,542,454	-				+0.5
2,542,497	+		Atu2572	0.11	+0.3
2,542,505	-		Atu2572	0.11	-0.1
2,542,522	+		Atu2572	0.13	+0.1
2,542,535	-		Atu2572	0.14	+0.6
2,542,601	+		Atu2572	0.19	-1.8
2,542,643	-		Atu2572	0.23	-0.1
2,542,647	-		Atu2572	0.23	+0.4
2,542,647	-		Atu2572	0.23	-0.4
2,542,740	-		Atu2572	0.31	+0.2
2,542,774	+		Atu2572	0.34	-1.6
2,542,918	-		Atu2572	0.46	+1.2
2,542,950	-		Atu2572	0.49	+1.3
2,543,119	-		Atu2572	0.63	+0.0
2,543,182	+		Atu2572	0.69	-0.7
2,543,229	-		Atu2572	0.73	+0.5
2,543,279	+		Atu2572	0.77	+0.1
2,543,287	-		Atu2572	0.77	+0.2
2,543,381	+		Atu2572	0.85	+0.1
2,543,385	+		Atu2572	0.86	-0.6
2,543,390	+		Atu2572	0.86	+0.2
2,543,531	+				+0.2
2,543,547	+				-0.1
2,543,553	+				+0.3
2,543,649	+				+0.0
2,543,649	+				+0.1
2,543,658	+				-2.0
2,543,708	+				+0.9
2,543,758	-				+0.0
2,543,769	+				-0.1
2,543,800	+				-0.1
2,543,808	-				+0.1
2,543,899	+		Atu2573	0.19	-0.3
2,543,932	-		Atu2573	0.23	-0.2
2,543,988	+		Atu2573	0.31	+3.2
2,544,134	-		Atu2573	0.52	-0.2
2,544,196	+		Atu2573	0.61	+0.1
2,544,206	+		Atu2573	0.63	+0.3
2,544,308	-		Atu2573	0.77	-0.4
2,544,393	+		Atu2573	0.90	-0.2
2,544,439	-				+0.6