Strain Fitness in Agrobacterium fabrum C58 around Atu2562

Experiment: R2A with bromate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with bromate 5 mM
2,533,847	+				-0.5
2,533,869	-				-0.1
2,533,879	-				+1.4
2,533,923	+				+2.0
2,533,936	+				+0.8
2,533,940	+				+0.9
2,533,974	-		Atu2561	0.13	+1.2
2,534,114	-		Atu2561	0.30	+0.9
2,534,162	-		Atu2561	0.36	+0.0
2,534,175	+		Atu2561	0.38	+0.7
2,534,226	-		Atu2561	0.45	+1.3
2,534,248	-		Atu2561	0.47	+1.2
2,534,255	+		Atu2561	0.48	+0.6
2,534,281	+		Atu2561	0.52	+1.6
2,534,296	+		Atu2561	0.53	+0.9
2,534,343	+		Atu2561	0.59	+0.7
2,534,351	-		Atu2561	0.60	+0.2
2,534,433	+		Atu2561	0.71	+0.4
2,534,466	+		Atu2561	0.75	+0.2
2,534,559	-		Atu2561	0.87	+1.0
2,534,645	+				-0.2
2,534,678	-				-0.1
2,534,722	-				-1.5
2,534,722	-				+0.3
2,534,743	+				+1.3
2,534,751	-				+1.3
2,534,775	-				+0.8
2,534,775	-				+1.0
2,534,781	-				+1.5
2,534,813	+		Atu2562	0.13	+0.9
2,534,852	+		Atu2562	0.19	+0.9
2,534,881	-		Atu2562	0.23	+1.2
2,534,886	-		Atu2562	0.24	+0.9
2,535,007	+		Atu2562	0.41	+0.9
2,535,026	-		Atu2562	0.44	+1.5
2,535,026	-		Atu2562	0.44	+1.6
2,535,041	-		Atu2562	0.46	+1.2
2,535,059	+		Atu2562	0.48	+1.3
2,535,231	+		Atu2562	0.72	+1.8
2,535,239	-		Atu2562	0.74	+0.9
2,535,239	-		Atu2562	0.74	+2.1
2,535,284	+		Atu2562	0.80	+0.7
2,535,300	-		Atu2562	0.82	+0.5
2,535,371	+				+1.1
2,535,376	+				+0.6
2,535,384	+				+0.7
2,535,459	+				+1.0
2,535,778	+		Atu2563	0.33	+0.7
2,535,862	+		Atu2563	0.41	+0.6
2,535,870	-		Atu2563	0.42	+0.7
2,535,919	+		Atu2563	0.46	+1.1
2,535,919	+		Atu2563	0.46	+0.9
2,535,927	-		Atu2563	0.47	+0.9
2,535,927	-		Atu2563	0.47	+0.8
2,535,931	+		Atu2563	0.47	+0.9
2,536,059	-		Atu2563	0.59	+0.1
2,536,092	-		Atu2563	0.62	+0.6
2,536,239	+		Atu2563	0.76	+0.1
2,536,281	+		Atu2563	0.80	+0.7
2,536,293	-		Atu2563	0.81	+0.4
2,536,299	+		Atu2563	0.81	+0.2
2,536,299	+		Atu2563	0.81	+0.7
2,536,319	+		Atu2563	0.83	-0.6
2,536,368	+		Atu2563	0.88	-0.4
2,536,392	+				+0.2
2,536,418	-				+0.1