Strain Fitness in Agrobacterium fabrum C58 around Atu2149

Experiment: R2A with bromate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with bromate 5 mM
2,112,914	+				+0.9
2,113,032	-				+0.8
2,113,133	-		Atu2148	0.18	-0.1
2,113,159	-		Atu2148	0.21	-0.2
2,113,341	+		Atu2148	0.42	-0.0
2,113,349	-		Atu2148	0.43	+0.5
2,113,367	-		Atu2148	0.45	+0.1
2,113,378	+		Atu2148	0.46	+0.5
2,113,402	+		Atu2148	0.49	+0.0
2,113,410	-		Atu2148	0.50	+0.2
2,113,412	+		Atu2148	0.50	-0.2
2,113,511	+		Atu2148	0.61	+0.3
2,113,623	+		Atu2148	0.74	-0.3
2,113,631	-		Atu2148	0.75	+0.5
2,113,663	+		Atu2148	0.78	-0.0
2,113,709	+		Atu2148	0.83	+0.2
2,113,819	-				-1.3
2,113,869	-				-0.2
2,113,893	+				-2.2
2,114,037	+		Atu2149	0.24	-0.3
2,114,067	-		Atu2149	0.27	-0.7
2,114,068	-		Atu2149	0.28	-0.7
2,114,086	-		Atu2149	0.30	-1.2
2,114,104	+		Atu2149	0.32	-0.8
2,114,195	-		Atu2149	0.44	+0.1
2,114,263	-		Atu2149	0.52	+0.7
2,114,274	+		Atu2149	0.54	-0.1
2,114,282	-		Atu2149	0.55	+0.7
2,114,282	-		Atu2149	0.55	-1.0
2,114,321	+		Atu2149	0.60	-0.2
2,114,341	+		Atu2149	0.62	-0.9
2,114,398	+		Atu2149	0.70	-2.1
2,114,401	-		Atu2149	0.70	-3.0
2,114,420	-		Atu2149	0.73	+0.3
2,114,433	-		Atu2149	0.74	-0.3
2,114,478	-		Atu2149	0.80	-1.3
2,114,579	-				+0.2
2,114,584	-				-0.3
2,114,756	+		Atu2150	0.10	-0.6
2,114,768	+		Atu2150	0.11	-0.1
2,114,780	+		Atu2150	0.12	-0.3
2,114,848	+		Atu2150	0.19	-0.3
2,114,853	+		Atu2150	0.19	+0.7
2,114,867	-		Atu2150	0.21	-0.5
2,114,867	-		Atu2150	0.21	-0.2
2,114,887	+		Atu2150	0.23	+0.6
2,114,895	+		Atu2150	0.23	-1.9
2,114,913	-		Atu2150	0.25	-1.7
2,115,012	+		Atu2150	0.34	+0.7
2,115,020	-		Atu2150	0.35	-0.2
2,115,031	+		Atu2150	0.36	-0.6
2,115,039	-		Atu2150	0.37	-0.8
2,115,118	+		Atu2150	0.44	-0.7
2,115,130	-		Atu2150	0.46	-0.1
2,115,289	+		Atu2150	0.61	+0.2
2,115,316	-		Atu2150	0.63	-0.2
2,115,426	-		Atu2150	0.73	+0.0
2,115,579	+		Atu2150	0.88	+0.0
2,115,579	+		Atu2150	0.88	+0.3
2,115,579	+		Atu2150	0.88	-0.7
2,115,579	+		Atu2150	0.88	+0.4
2,115,579	+		Atu2150	0.88	+0.7
2,115,587	-		Atu2150	0.89	-0.5
2,115,592	-		Atu2150	0.89	-0.9