Strain Fitness in Agrobacterium fabrum C58 around Atu1403

Experiment: R2A with bromate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with bromate 5 mM
1,396,369	+		Atu1401	0.89	+0.7
1,396,397	-				-0.1
1,396,514	+				-0.8
1,396,588	+				+0.3
1,396,588	+				+0.5
1,396,588	+				-0.1
1,396,594	-		Atu1402	0.10	-0.2
1,396,596	-		Atu1402	0.10	-0.2
1,396,596	-		Atu1402	0.10	-0.3
1,396,598	+		Atu1402	0.11	-0.4
1,396,632	-		Atu1402	0.15	+0.4
1,396,821	+		Atu1402	0.37	+0.2
1,396,878	+		Atu1402	0.44	+2.0
1,396,878	+		Atu1402	0.44	+0.6
1,396,930	+		Atu1402	0.50	+0.7
1,396,992	-		Atu1402	0.58	-0.4
1,396,992	-		Atu1402	0.58	-0.0
1,397,028	+		Atu1402	0.62	-0.3
1,397,085	-		Atu1402	0.69	+0.1
1,397,096	-		Atu1402	0.70	+0.4
1,397,140	-		Atu1402	0.76	+1.4
1,397,181	-		Atu1402	0.81	+0.2
1,397,189	+		Atu1402	0.82	-0.5
1,397,194	+		Atu1402	0.82	+1.2
1,397,202	-		Atu1402	0.83	+0.4
1,397,202	-		Atu1402	0.83	-1.1
1,397,289	+				+0.0
1,397,322	-				+0.2
1,397,345	-				-0.1
1,397,351	-				-0.3
1,397,353	+				+0.0
1,397,357	-				+0.1
1,397,359	+				+0.1
1,397,362	-				-0.4
1,397,406	-				-0.6
1,397,467	-		Atu1403	0.14	-1.5
1,397,539	+		Atu1403	0.22	-0.2
1,397,627	-		Atu1403	0.31	+0.2
1,397,633	+		Atu1403	0.32	+0.3
1,397,654	-		Atu1403	0.34	-0.2
1,397,664	+		Atu1403	0.35	-0.8
1,397,672	-		Atu1403	0.36	-1.1
1,397,673	-		Atu1403	0.36	+0.4
1,397,673	-		Atu1403	0.36	-0.9
1,397,695	-		Atu1403	0.39	-0.5
1,397,720	+		Atu1403	0.42	-0.1
1,397,739	+		Atu1403	0.44	+0.3
1,397,747	-		Atu1403	0.44	-0.6
1,397,769	-		Atu1403	0.47	-0.7
1,397,781	+		Atu1403	0.48	-0.4
1,397,890	+		Atu1403	0.60	-0.9
1,397,897	+		Atu1403	0.61	+0.3
1,397,904	+		Atu1403	0.62	+0.3
1,397,966	+		Atu1403	0.68	+1.2
1,397,974	-		Atu1403	0.69	+0.0
1,397,974	-		Atu1403	0.69	-0.0
1,397,974	-		Atu1403	0.69	+0.1
1,397,999	+		Atu1403	0.72	+1.4
1,398,007	-		Atu1403	0.73	-0.4
1,398,014	-		Atu1403	0.74	-0.1
1,398,029	-		Atu1403	0.75	-0.5
1,398,035	+		Atu1403	0.76	-0.3
1,398,099	+		Atu1403	0.83	-0.2
1,398,320	-				-1.3
1,398,501	-		Atu1404	0.15	-0.6
1,398,633	+		Atu1404	0.26	-1.1
1,398,634	+		Atu1404	0.26	-0.5
1,398,670	+		Atu1404	0.29	+0.2
1,398,678	-		Atu1404	0.29	-0.9
1,398,678	-		Atu1404	0.29	-0.3
1,398,796	+		Atu1404	0.39	-0.3
1,398,890	+		Atu1404	0.47	-0.4
1,398,890	+		Atu1404	0.47	+0.0
1,398,898	-		Atu1404	0.47	-0.1
1,398,989	+		Atu1404	0.55	-0.6
1,399,101	+		Atu1404	0.64	+0.8
1,399,107	-		Atu1404	0.65	+0.5
1,399,109	+		Atu1404	0.65	-0.3
1,399,150	+		Atu1404	0.68	-0.2
1,399,150	+		Atu1404	0.68	+0.1
1,399,173	-		Atu1404	0.70	+0.1