Strain Fitness in Agrobacterium fabrum C58 around Atu1047

Experiment: R2A with bromate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with bromate 5 mM
1,040,373	-		Atu1046	0.32	+0.4
1,040,392	-		Atu1046	0.34	+0.1
1,040,410	+		Atu1046	0.35	-1.5
1,040,537	-		Atu1046	0.47	+0.5
1,040,565	+		Atu1046	0.50	-0.3
1,040,604	-		Atu1046	0.54	-0.3
1,040,675	+		Atu1046	0.61	+0.2
1,040,703	+		Atu1046	0.63	+0.1
1,040,731	+		Atu1046	0.66	+0.3
1,040,791	+		Atu1046	0.72	-0.1
1,040,805	-		Atu1046	0.73	-0.0
1,040,820	+		Atu1046	0.75	+0.1
1,040,820	+		Atu1046	0.75	+0.1
1,040,843	+		Atu1046	0.77	-0.2
1,040,851	-		Atu1046	0.77	+0.5
1,040,851	-		Atu1046	0.77	-0.2
1,040,888	+		Atu1046	0.81	+0.2
1,040,947	+		Atu1046	0.87	-0.3
1,040,986	-				+0.4
1,041,027	-				-2.4
1,041,027	-				+0.2
1,041,032	-				+0.3
1,041,170	+				+0.2
1,041,178	-				+0.9
1,041,178	-				+0.1
1,041,178	-				-0.0
1,041,180	-				+0.7
1,041,204	-				-0.0
1,041,204	-				+0.1
1,041,204	-				+1.2
1,041,312	-				-0.3
1,041,320	+				+0.2
1,041,369	-				+0.0
1,041,408	+				-2.1
1,041,416	-				-0.6
1,041,417	-				+0.0
1,041,482	+		Atu1047	0.15	+0.7
1,041,699	+		Atu1047	0.44	+0.0
1,041,724	+		Atu1047	0.47	-0.1
1,041,855	+		Atu1047	0.64	-2.4
1,041,863	-		Atu1047	0.65	-0.1
1,041,863	-		Atu1047	0.65	+1.2
1,041,870	+		Atu1047	0.66	+0.7
1,041,872	+		Atu1047	0.67	+0.5
1,041,875	+		Atu1047	0.67	-0.2
1,041,916	-		Atu1047	0.72	-0.7
1,041,931	+		Atu1047	0.74	+1.5
1,041,931	+		Atu1047	0.74	+0.1
1,041,931	+		Atu1047	0.74	-0.4
1,041,939	-		Atu1047	0.75	+0.1
1,041,939	-		Atu1047	0.75	+0.4
1,041,939	-		Atu1047	0.75	+0.3
1,042,106	+				+0.8
1,042,114	-				-0.9
1,042,114	-				+0.2
1,042,140	+				-0.9
1,042,140	+				-0.3
1,042,165	+				+0.9
1,042,188	-				+0.1
1,042,189	+				+0.4
1,042,189	+				+0.2
1,042,194	+				+0.1
1,042,197	-				+0.8
1,042,293	+		Atu1048	0.21	-0.2
1,042,301	-		Atu1048	0.22	-0.8
1,042,301	-		Atu1048	0.22	+0.2
1,042,318	-		Atu1048	0.24	+0.4
1,042,359	-		Atu1048	0.29	+0.8
1,042,364	+		Atu1048	0.30	-0.4
1,042,372	-		Atu1048	0.31	+0.7
1,042,372	-		Atu1048	0.31	-0.6
1,042,537	-		Atu1048	0.51	-0.1
1,042,828	-		Atu1048	0.86	+0.3
1,042,853	+		Atu1048	0.89	+0.4
1,042,885	-				-0.6
1,043,048	-				+0.4