Experiment: Maltitol 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0103 and Echvi_0104 are separated by 104 nucleotides Echvi_0104 and Echvi_0105 are separated by 18 nucleotides Echvi_0105 and Echvi_0106 are separated by 43 nucleotides Echvi_0106 and Echvi_0107 are separated by 8 nucleotides Echvi_0107 and Echvi_0108 are separated by 2 nucleotides
Echvi_0103: Echvi_0103 - hypothetical protein, at 101,012 to 101,533
_0103
Echvi_0104: Echvi_0104 - Iron-sulfur cluster assembly accessory protein, at 101,638 to 101,958
_0104
Echvi_0105: Echvi_0105 - hypothetical protein, at 101,977 to 102,477
_0105
Echvi_0106: Echvi_0106 - hypothetical protein, at 102,521 to 102,982
_0106
Echvi_0107: Echvi_0107 - dihydroneopterin aldolase, at 102,991 to 103,356
_0107
Echvi_0108: Echvi_0108 - DivIVA domain, at 103,359 to 104,243
_0108
Position (kb) 102
103 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 101.536 kb on - strand at 101.538 kb on + strand at 101.559 kb on + strand at 101.587 kb on + strand at 101.588 kb on - strand at 101.629 kb on + strand at 101.652 kb on + strand at 101.652 kb on + strand at 101.653 kb on - strand at 101.700 kb on + strand, within Echvi_0104 at 101.701 kb on - strand, within Echvi_0104 at 101.739 kb on - strand, within Echvi_0104 at 101.973 kb on + strand at 101.973 kb on + strand at 101.973 kb on + strand at 101.974 kb on - strand at 102.152 kb on + strand, within Echvi_0105 at 102.153 kb on - strand, within Echvi_0105 at 102.153 kb on - strand, within Echvi_0105 at 102.229 kb on + strand, within Echvi_0105 at 102.229 kb on + strand, within Echvi_0105 at 102.230 kb on - strand, within Echvi_0105 at 102.230 kb on - strand, within Echvi_0105 at 102.231 kb on + strand, within Echvi_0105 at 102.231 kb on + strand, within Echvi_0105 at 102.232 kb on - strand, within Echvi_0105 at 102.267 kb on - strand, within Echvi_0105 at 102.361 kb on + strand, within Echvi_0105 at 102.362 kb on - strand, within Echvi_0105 at 102.455 kb on + strand at 102.455 kb on + strand at 102.456 kb on - strand at 102.456 kb on - strand at 102.458 kb on - strand at 102.476 kb on - strand at 102.501 kb on - strand at 102.522 kb on + strand at 102.524 kb on + strand at 102.601 kb on + strand, within Echvi_0106 at 102.688 kb on - strand, within Echvi_0106 at 102.688 kb on - strand, within Echvi_0106 at 102.688 kb on - strand, within Echvi_0106 at 102.691 kb on + strand, within Echvi_0106 at 102.691 kb on + strand, within Echvi_0106 at 102.692 kb on - strand, within Echvi_0106 at 102.919 kb on + strand, within Echvi_0106 at 102.920 kb on - strand, within Echvi_0106 at 102.920 kb on - strand, within Echvi_0106 at 102.920 kb on - strand, within Echvi_0106 at 102.921 kb on + strand, within Echvi_0106 at 102.921 kb on + strand, within Echvi_0106 at 102.952 kb on + strand at 102.953 kb on - strand at 102.961 kb on + strand at 102.984 kb on + strand at 102.984 kb on + strand at 102.984 kb on + strand at 102.985 kb on - strand at 103.357 kb on - strand at 103.491 kb on - strand, within Echvi_0108 at 103.684 kb on - strand, within Echvi_0108 at 103.833 kb on + strand, within Echvi_0108 at 103.834 kb on - strand, within Echvi_0108
Per-strain Table
Position Strand Gene LocusTag Fraction Maltitol 20mM (C) remove 101,536 - -2.2 101,538 + -0.0 101,559 + -0.3 101,587 + +0.8 101,588 - -2.6 101,629 + -0.2 101,652 + -0.9 101,652 + +1.5 101,653 - +2.3 101,700 + Echvi_0104 0.19 +0.9 101,701 - Echvi_0104 0.20 -0.5 101,739 - Echvi_0104 0.31 +3.4 101,973 + +1.8 101,973 + -1.4 101,973 + +0.6 101,974 - -0.1 102,152 + Echvi_0105 0.35 +1.0 102,153 - Echvi_0105 0.35 -0.3 102,153 - Echvi_0105 0.35 +0.2 102,229 + Echvi_0105 0.50 +0.4 102,229 + Echvi_0105 0.50 -1.5 102,230 - Echvi_0105 0.50 +1.0 102,230 - Echvi_0105 0.50 -0.8 102,231 + Echvi_0105 0.51 -0.0 102,231 + Echvi_0105 0.51 -1.6 102,232 - Echvi_0105 0.51 +0.6 102,267 - Echvi_0105 0.58 +2.0 102,361 + Echvi_0105 0.77 +0.2 102,362 - Echvi_0105 0.77 +0.5 102,455 + -0.9 102,455 + -2.3 102,456 - -0.6 102,456 - +0.3 102,458 - -0.3 102,476 - +0.5 102,501 - +0.4 102,522 + -0.3 102,524 + -0.3 102,601 + Echvi_0106 0.17 -0.7 102,688 - Echvi_0106 0.36 -0.8 102,688 - Echvi_0106 0.36 -0.5 102,688 - Echvi_0106 0.36 -0.6 102,691 + Echvi_0106 0.37 -0.2 102,691 + Echvi_0106 0.37 +1.0 102,692 - Echvi_0106 0.37 -0.1 102,919 + Echvi_0106 0.86 -0.4 102,920 - Echvi_0106 0.86 -3.7 102,920 - Echvi_0106 0.86 -1.1 102,920 - Echvi_0106 0.86 -0.4 102,921 + Echvi_0106 0.87 -0.6 102,921 + Echvi_0106 0.87 -0.1 102,952 + +0.1 102,953 - +0.4 102,961 + -0.5 102,984 + +1.0 102,984 + +0.4 102,984 + +0.2 102,985 - +1.3 103,357 - -0.8 103,491 - Echvi_0108 0.15 -1.4 103,684 - Echvi_0108 0.37 -0.5 103,833 + Echvi_0108 0.54 +1.0 103,834 - Echvi_0108 0.54 +0.2
Or see this region's nucleotide sequence