Strain Fitness in Agrobacterium fabrum C58 around Atu0926

Experiment: R2A with hypochlorite 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0924 and Atu0925 are separated by 20 nucleotidesAtu0925 and Atu0926 overlap by 8 nucleotidesAtu0926 and Atu0927 are separated by 123 nucleotides Atu0924: Atu0924 - hypothetical protein, at 913,430 to 913,624 Atu0924 Atu0925: Atu0925 - hypothetical protein, at 913,645 to 914,193 Atu0925 Atu0926: Atu0926 - hypothetical protein, at 914,186 to 914,773 Atu0926 Atu0927: Atu0927 - LysE family transporter, at 914,897 to 915,505 Atu0927 Position (kb) 914 915Strain fitness (log2 ratio) -2 -1 0 1 2at 913.213 kb on + strandat 913.332 kb on + strandat 913.340 kb on - strandat 913.344 kb on + strandat 913.344 kb on + strandat 913.381 kb on - strandat 913.381 kb on - strandat 913.432 kb on - strandat 913.528 kb on + strand, within Atu0924at 913.528 kb on - strand, within Atu0924at 913.596 kb on - strand, within Atu0924at 913.610 kb on + strandat 913.656 kb on + strandat 913.775 kb on + strand, within Atu0925at 913.785 kb on + strand, within Atu0925at 913.865 kb on - strand, within Atu0925at 913.900 kb on - strand, within Atu0925at 914.086 kb on + strand, within Atu0925at 914.185 kb on - strandat 914.247 kb on - strand, within Atu0926at 914.380 kb on - strand, within Atu0926at 914.427 kb on + strand, within Atu0926at 914.435 kb on - strand, within Atu0926at 914.531 kb on + strand, within Atu0926at 914.554 kb on + strand, within Atu0926at 914.576 kb on - strand, within Atu0926at 914.605 kb on - strand, within Atu0926at 914.842 kb on + strandat 914.852 kb on + strandat 914.904 kb on + strandat 914.912 kb on - strandat 914.933 kb on - strandat 914.971 kb on - strand, within Atu0927at 915.009 kb on + strand, within Atu0927at 915.009 kb on + strand, within Atu0927at 915.009 kb on + strand, within Atu0927at 915.017 kb on - strand, within Atu0927at 915.017 kb on - strand, within Atu0927at 915.017 kb on - strand, within Atu0927at 915.112 kb on - strand, within Atu0927at 915.201 kb on + strand, within Atu0927at 915.219 kb on + strand, within Atu0927at 915.222 kb on - strand, within Atu0927at 915.227 kb on - strand, within Atu0927at 915.229 kb on + strand, within Atu0927at 915.356 kb on - strand, within Atu0927at 915.362 kb on + strand, within Atu0927at 915.600 kb on - strandat 915.690 kb on - strandat 915.692 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with hypochlorite 6.25 mM
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913,213 + +1.4
913,332 + +1.1
913,340 - +0.3
913,344 + -0.0
913,344 + +0.6
913,381 - +1.9
913,381 - -0.3
913,432 - -2.5
913,528 + Atu0924 0.50 -0.8
913,528 - Atu0924 0.50 +0.1
913,596 - Atu0924 0.85 +0.7
913,610 + -0.9
913,656 + -0.1
913,775 + Atu0925 0.24 -0.9
913,785 + Atu0925 0.26 -1.8
913,865 - Atu0925 0.40 -1.4
913,900 - Atu0925 0.46 -1.2
914,086 + Atu0925 0.80 +0.5
914,185 - -1.1
914,247 - Atu0926 0.10 -2.6
914,380 - Atu0926 0.33 -1.5
914,427 + Atu0926 0.41 -2.1
914,435 - Atu0926 0.42 -0.9
914,531 + Atu0926 0.59 -1.1
914,554 + Atu0926 0.63 -2.6
914,576 - Atu0926 0.66 -1.5
914,605 - Atu0926 0.71 -1.8
914,842 + -0.3
914,852 + -1.1
914,904 + +0.3
914,912 - +1.4
914,933 - +0.1
914,971 - Atu0927 0.12 -0.1
915,009 + Atu0927 0.18 +0.1
915,009 + Atu0927 0.18 +1.2
915,009 + Atu0927 0.18 -0.2
915,017 - Atu0927 0.20 +0.3
915,017 - Atu0927 0.20 +0.4
915,017 - Atu0927 0.20 +0.5
915,112 - Atu0927 0.35 -1.8
915,201 + Atu0927 0.50 +2.2
915,219 + Atu0927 0.53 -0.2
915,222 - Atu0927 0.53 -0.6
915,227 - Atu0927 0.54 -0.1
915,229 + Atu0927 0.55 +0.6
915,356 - Atu0927 0.75 +1.3
915,362 + Atu0927 0.76 -1.7
915,600 - -0.7
915,690 - -0.0
915,692 - +0.0

Or see this region's nucleotide sequence