Strain Fitness in Escherichia coli BW25113 around b2721

Experiment: 3-methyl-3-butenol 0.31 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthycG and hycF overlap by 1 nucleotideshycF and hycE are separated by 9 nucleotideshycE and hycD are separated by 17 nucleotideshycD and hycC are separated by 2 nucleotides b2719: hycG - hydrogenase 3 and formate hydrogenase complex, HycG subunit (NCBI), at 2,841,465 to 2,842,232 hycG b2720: hycF - formate hydrogenlyase complex iron-sulfur protein (NCBI), at 2,842,232 to 2,842,774 hycF b2721: hycE - hydrogenase 3, large subunit (NCBI), at 2,842,784 to 2,844,493 hycE b2722: hycD - hydrogenase 3, membrane subunit (NCBI), at 2,844,511 to 2,845,434 hycD b2723: hycC - NADH dehydrogenase subunit N (NCBI), at 2,845,437 to 2,847,263 hycC Position (kb) 2842 2843 2844 2845Strain fitness (log2 ratio) -2 -1 0 1at 2841.821 kb on - strand, within hycGat 2841.861 kb on - strand, within hycGat 2841.870 kb on - strand, within hycGat 2842.019 kb on + strand, within hycGat 2842.047 kb on - strand, within hycGat 2842.093 kb on - strand, within hycGat 2842.093 kb on - strand, within hycGat 2842.113 kb on + strand, within hycGat 2842.245 kb on + strandat 2842.253 kb on - strandat 2842.346 kb on + strand, within hycFat 2842.367 kb on - strand, within hycFat 2842.377 kb on + strand, within hycFat 2842.384 kb on - strand, within hycFat 2842.490 kb on + strand, within hycFat 2842.523 kb on - strand, within hycFat 2842.523 kb on - strand, within hycFat 2842.545 kb on + strand, within hycFat 2842.584 kb on + strand, within hycFat 2842.584 kb on + strand, within hycFat 2842.584 kb on + strand, within hycFat 2842.599 kb on + strand, within hycFat 2842.773 kb on - strandat 2842.853 kb on - strandat 2842.890 kb on + strandat 2842.890 kb on + strandat 2842.890 kb on + strandat 2843.106 kb on - strand, within hycEat 2843.139 kb on + strand, within hycEat 2843.144 kb on + strand, within hycEat 2843.147 kb on - strand, within hycEat 2843.254 kb on + strand, within hycEat 2843.407 kb on - strand, within hycEat 2843.459 kb on + strand, within hycEat 2843.564 kb on + strand, within hycEat 2843.572 kb on - strand, within hycEat 2843.600 kb on + strand, within hycEat 2843.600 kb on + strand, within hycEat 2843.626 kb on + strand, within hycEat 2843.631 kb on + strand, within hycEat 2843.663 kb on + strand, within hycEat 2843.674 kb on - strand, within hycEat 2843.704 kb on + strand, within hycEat 2843.704 kb on + strand, within hycEat 2843.731 kb on - strand, within hycEat 2843.753 kb on - strand, within hycEat 2843.753 kb on - strand, within hycEat 2843.765 kb on + strand, within hycEat 2843.952 kb on + strand, within hycEat 2844.142 kb on + strand, within hycEat 2844.231 kb on + strand, within hycEat 2844.284 kb on - strand, within hycEat 2844.422 kb on + strandat 2844.422 kb on + strandat 2844.443 kb on - strandat 2844.462 kb on + strandat 2844.470 kb on - strandat 2844.470 kb on - strandat 2844.569 kb on - strandat 2844.576 kb on + strandat 2844.607 kb on - strand, within hycDat 2844.761 kb on - strand, within hycDat 2844.789 kb on - strand, within hycDat 2844.937 kb on + strand, within hycDat 2844.945 kb on - strand, within hycDat 2844.945 kb on - strand, within hycDat 2844.984 kb on + strand, within hycDat 2845.140 kb on - strand, within hycDat 2845.212 kb on - strand, within hycDat 2845.231 kb on - strand, within hycDat 2845.269 kb on - strand, within hycDat 2845.320 kb on + strand, within hycDat 2845.428 kb on - strandat 2845.428 kb on - strandat 2845.487 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-3-butenol 0.31 vol%
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2,841,821 - hycG b2719 0.46 +0.1
2,841,861 - hycG b2719 0.52 -0.8
2,841,870 - hycG b2719 0.53 +0.4
2,842,019 + hycG b2719 0.72 -0.6
2,842,047 - hycG b2719 0.76 +0.5
2,842,093 - hycG b2719 0.82 +0.4
2,842,093 - hycG b2719 0.82 +0.9
2,842,113 + hycG b2719 0.84 -0.7
2,842,245 + -0.0
2,842,253 - -0.2
2,842,346 + hycF b2720 0.21 -0.4
2,842,367 - hycF b2720 0.25 +0.1
2,842,377 + hycF b2720 0.27 -0.5
2,842,384 - hycF b2720 0.28 -0.7
2,842,490 + hycF b2720 0.48 +0.2
2,842,523 - hycF b2720 0.54 -0.0
2,842,523 - hycF b2720 0.54 +0.9
2,842,545 + hycF b2720 0.58 +0.4
2,842,584 + hycF b2720 0.65 +0.5
2,842,584 + hycF b2720 0.65 +0.9
2,842,584 + hycF b2720 0.65 +0.6
2,842,599 + hycF b2720 0.68 +0.2
2,842,773 - +0.2
2,842,853 - -0.4
2,842,890 + -0.2
2,842,890 + +0.6
2,842,890 + +0.1
2,843,106 - hycE b2721 0.19 +0.1
2,843,139 + hycE b2721 0.21 +0.9
2,843,144 + hycE b2721 0.21 +0.3
2,843,147 - hycE b2721 0.21 +0.6
2,843,254 + hycE b2721 0.27 -0.2
2,843,407 - hycE b2721 0.36 +0.2
2,843,459 + hycE b2721 0.39 +0.7
2,843,564 + hycE b2721 0.46 -0.0
2,843,572 - hycE b2721 0.46 +0.6
2,843,600 + hycE b2721 0.48 +0.0
2,843,600 + hycE b2721 0.48 -0.7
2,843,626 + hycE b2721 0.49 -0.0
2,843,631 + hycE b2721 0.50 +0.1
2,843,663 + hycE b2721 0.51 +0.3
2,843,674 - hycE b2721 0.52 +0.4
2,843,704 + hycE b2721 0.54 +1.0
2,843,704 + hycE b2721 0.54 +0.9
2,843,731 - hycE b2721 0.55 -0.0
2,843,753 - hycE b2721 0.57 -0.2
2,843,753 - hycE b2721 0.57 -0.5
2,843,765 + hycE b2721 0.57 +0.9
2,843,952 + hycE b2721 0.68 -0.6
2,844,142 + hycE b2721 0.79 -0.2
2,844,231 + hycE b2721 0.85 +0.4
2,844,284 - hycE b2721 0.88 +0.5
2,844,422 + -0.4
2,844,422 + +0.4
2,844,443 - +0.9
2,844,462 + -0.2
2,844,470 - -0.4
2,844,470 - -0.1
2,844,569 - -0.2
2,844,576 + +0.2
2,844,607 - hycD b2722 0.10 +0.0
2,844,761 - hycD b2722 0.27 +0.5
2,844,789 - hycD b2722 0.30 +0.2
2,844,937 + hycD b2722 0.46 -0.6
2,844,945 - hycD b2722 0.47 -0.4
2,844,945 - hycD b2722 0.47 +1.4
2,844,984 + hycD b2722 0.51 +0.3
2,845,140 - hycD b2722 0.68 -0.6
2,845,212 - hycD b2722 0.76 -0.5
2,845,231 - hycD b2722 0.78 -2.2
2,845,269 - hycD b2722 0.82 +0.8
2,845,320 + hycD b2722 0.88 -1.3
2,845,428 - +0.1
2,845,428 - -0.7
2,845,487 + +0.0

Or see this region's nucleotide sequence