Experiment: KB with Rotenone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5016 and Psyr_5017 are separated by 10 nucleotides Psyr_5017 and Psyr_5018 overlap by 4 nucleotides
Psyr_5016: Psyr_5016 - Alanine dehydrogenase/PNT, C-terminal:Alanine dehydrogenase/PNT, N-terminal, at 5,957,679 to 5,958,800
_5016
Psyr_5017: Psyr_5017 - NAD(P) transhydrogenase subunit alpha, at 5,958,811 to 5,959,134
_5017
Psyr_5018: Psyr_5018 - NAD(P) transhydrogenase, beta subunit, at 5,959,131 to 5,960,585
_5018
Position (kb) 5958
5959
5960 Strain fitness (log2 ratio) -1
0
1
2 at 5957.826 kb on + strand, within Psyr_5016 at 5957.826 kb on + strand, within Psyr_5016 at 5957.826 kb on + strand, within Psyr_5016 at 5957.827 kb on - strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.869 kb on - strand, within Psyr_5016 at 5957.869 kb on - strand, within Psyr_5016 at 5957.869 kb on - strand, within Psyr_5016 at 5958.247 kb on + strand, within Psyr_5016 at 5958.248 kb on - strand, within Psyr_5016 at 5958.723 kb on + strand at 5958.839 kb on - strand at 5958.857 kb on + strand, within Psyr_5017 at 5958.868 kb on + strand, within Psyr_5017 at 5958.868 kb on + strand, within Psyr_5017 at 5958.868 kb on + strand, within Psyr_5017 at 5958.869 kb on - strand, within Psyr_5017 at 5958.869 kb on - strand, within Psyr_5017 at 5958.869 kb on - strand, within Psyr_5017 at 5958.869 kb on - strand, within Psyr_5017 at 5958.869 kb on - strand, within Psyr_5017 at 5958.869 kb on - strand, within Psyr_5017 at 5958.878 kb on - strand, within Psyr_5017 at 5959.149 kb on - strand at 5959.158 kb on + strand at 5959.159 kb on - strand at 5959.159 kb on - strand at 5959.159 kb on - strand at 5959.338 kb on + strand, within Psyr_5018 at 5959.339 kb on - strand, within Psyr_5018 at 5959.471 kb on + strand, within Psyr_5018 at 5959.471 kb on + strand, within Psyr_5018 at 5959.472 kb on - strand, within Psyr_5018 at 5959.472 kb on - strand, within Psyr_5018 at 5959.472 kb on - strand, within Psyr_5018 at 5959.580 kb on + strand, within Psyr_5018 at 5959.581 kb on - strand, within Psyr_5018 at 5959.626 kb on + strand, within Psyr_5018 at 5959.627 kb on - strand, within Psyr_5018 at 5959.627 kb on - strand, within Psyr_5018 at 5959.852 kb on - strand, within Psyr_5018 at 5959.852 kb on - strand, within Psyr_5018 at 5959.852 kb on - strand, within Psyr_5018 at 5959.924 kb on + strand, within Psyr_5018 at 5959.950 kb on + strand, within Psyr_5018 at 5959.950 kb on + strand, within Psyr_5018 at 5959.950 kb on + strand, within Psyr_5018 at 5959.950 kb on + strand, within Psyr_5018 at 5959.950 kb on + strand, within Psyr_5018 at 5959.950 kb on + strand, within Psyr_5018 at 5959.950 kb on + strand, within Psyr_5018 at 5959.950 kb on + strand, within Psyr_5018 at 5959.951 kb on - strand, within Psyr_5018 at 5959.951 kb on - strand, within Psyr_5018 at 5959.951 kb on - strand, within Psyr_5018 at 5959.951 kb on - strand, within Psyr_5018 at 5959.951 kb on - strand, within Psyr_5018
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml remove 5,957,826 + Psyr_5016 0.13 +1.6 5,957,826 + Psyr_5016 0.13 +0.7 5,957,826 + Psyr_5016 0.13 +0.7 5,957,827 - Psyr_5016 0.13 -0.4 5,957,868 + Psyr_5016 0.17 -0.3 5,957,868 + Psyr_5016 0.17 +0.7 5,957,868 + Psyr_5016 0.17 +1.1 5,957,868 + Psyr_5016 0.17 -0.9 5,957,869 - Psyr_5016 0.17 -0.8 5,957,869 - Psyr_5016 0.17 -1.7 5,957,869 - Psyr_5016 0.17 -0.8 5,958,247 + Psyr_5016 0.51 -0.2 5,958,248 - Psyr_5016 0.51 +0.4 5,958,723 + +0.4 5,958,839 - -0.2 5,958,857 + Psyr_5017 0.14 -0.5 5,958,868 + Psyr_5017 0.18 +0.5 5,958,868 + Psyr_5017 0.18 -0.5 5,958,868 + Psyr_5017 0.18 +0.5 5,958,869 - Psyr_5017 0.18 +0.8 5,958,869 - Psyr_5017 0.18 +0.7 5,958,869 - Psyr_5017 0.18 +1.1 5,958,869 - Psyr_5017 0.18 -0.7 5,958,869 - Psyr_5017 0.18 -1.2 5,958,869 - Psyr_5017 0.18 +1.2 5,958,878 - Psyr_5017 0.21 +0.1 5,959,149 - +0.6 5,959,158 + +0.1 5,959,159 - +0.3 5,959,159 - +0.3 5,959,159 - +0.7 5,959,338 + Psyr_5018 0.14 +1.7 5,959,339 - Psyr_5018 0.14 +0.0 5,959,471 + Psyr_5018 0.23 -0.1 5,959,471 + Psyr_5018 0.23 +0.0 5,959,472 - Psyr_5018 0.23 +0.2 5,959,472 - Psyr_5018 0.23 -0.1 5,959,472 - Psyr_5018 0.23 +0.1 5,959,580 + Psyr_5018 0.31 +0.0 5,959,581 - Psyr_5018 0.31 +0.8 5,959,626 + Psyr_5018 0.34 +0.7 5,959,627 - Psyr_5018 0.34 -0.2 5,959,627 - Psyr_5018 0.34 +2.1 5,959,852 - Psyr_5018 0.50 +0.1 5,959,852 - Psyr_5018 0.50 -0.2 5,959,852 - Psyr_5018 0.50 -0.2 5,959,924 + Psyr_5018 0.55 +0.5 5,959,950 + Psyr_5018 0.56 +0.8 5,959,950 + Psyr_5018 0.56 +0.2 5,959,950 + Psyr_5018 0.56 +0.0 5,959,950 + Psyr_5018 0.56 +0.7 5,959,950 + Psyr_5018 0.56 +1.0 5,959,950 + Psyr_5018 0.56 +1.0 5,959,950 + Psyr_5018 0.56 -0.0 5,959,950 + Psyr_5018 0.56 +2.4 5,959,951 - Psyr_5018 0.56 +0.8 5,959,951 - Psyr_5018 0.56 -0.3 5,959,951 - Psyr_5018 0.56 +0.6 5,959,951 - Psyr_5018 0.56 -1.5 5,959,951 - Psyr_5018 0.56 -0.0
Or see this region's nucleotide sequence