Experiment: KB with Rotenone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3977 and Psyr_3978 are separated by 35 nucleotides Psyr_3978 and Psyr_3979 are separated by 129 nucleotides
Psyr_3977: Psyr_3977 - Urea amidolyase-related protein, at 4,724,093 to 4,728,559
_3977
Psyr_3978: Psyr_3978 - Amidase, at 4,728,595 to 4,730,409
_3978
Psyr_3979: Psyr_3979 - conserved hypothetical protein, at 4,730,539 to 4,733,874
_3979
Position (kb) 4728
4729
4730
4731 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4727.675 kb on + strand, within Psyr_3977 at 4727.675 kb on + strand, within Psyr_3977 at 4727.675 kb on + strand, within Psyr_3977 at 4727.675 kb on + strand, within Psyr_3977 at 4727.676 kb on - strand, within Psyr_3977 at 4727.676 kb on - strand, within Psyr_3977 at 4727.738 kb on - strand, within Psyr_3977 at 4727.773 kb on + strand, within Psyr_3977 at 4727.773 kb on + strand, within Psyr_3977 at 4727.773 kb on + strand, within Psyr_3977 at 4727.774 kb on - strand, within Psyr_3977 at 4727.792 kb on + strand, within Psyr_3977 at 4727.793 kb on - strand, within Psyr_3977 at 4727.819 kb on + strand, within Psyr_3977 at 4727.820 kb on - strand, within Psyr_3977 at 4727.879 kb on + strand, within Psyr_3977 at 4727.879 kb on + strand, within Psyr_3977 at 4727.879 kb on + strand, within Psyr_3977 at 4727.880 kb on - strand, within Psyr_3977 at 4727.933 kb on + strand, within Psyr_3977 at 4727.933 kb on + strand, within Psyr_3977 at 4727.934 kb on - strand, within Psyr_3977 at 4727.934 kb on - strand, within Psyr_3977 at 4727.934 kb on - strand, within Psyr_3977 at 4727.934 kb on - strand, within Psyr_3977 at 4727.946 kb on - strand, within Psyr_3977 at 4728.209 kb on - strand at 4728.519 kb on + strand at 4728.519 kb on + strand at 4728.639 kb on - strand at 4728.650 kb on - strand at 4728.769 kb on + strand at 4728.770 kb on - strand at 4728.844 kb on - strand, within Psyr_3978 at 4728.844 kb on - strand, within Psyr_3978 at 4728.886 kb on + strand, within Psyr_3978 at 4728.886 kb on + strand, within Psyr_3978 at 4728.892 kb on + strand, within Psyr_3978 at 4728.893 kb on - strand, within Psyr_3978 at 4729.205 kb on + strand, within Psyr_3978 at 4729.274 kb on + strand, within Psyr_3978 at 4729.275 kb on - strand, within Psyr_3978 at 4729.312 kb on + strand, within Psyr_3978 at 4729.313 kb on - strand, within Psyr_3978 at 4729.525 kb on + strand, within Psyr_3978 at 4729.525 kb on + strand, within Psyr_3978 at 4729.526 kb on - strand, within Psyr_3978 at 4729.650 kb on + strand, within Psyr_3978 at 4729.666 kb on + strand, within Psyr_3978 at 4729.728 kb on - strand, within Psyr_3978 at 4729.804 kb on + strand, within Psyr_3978 at 4729.807 kb on + strand, within Psyr_3978 at 4729.808 kb on - strand, within Psyr_3978 at 4729.835 kb on - strand, within Psyr_3978 at 4729.922 kb on - strand, within Psyr_3978 at 4730.144 kb on - strand, within Psyr_3978 at 4730.144 kb on - strand, within Psyr_3978 at 4730.342 kb on - strand at 4730.408 kb on - strand at 4730.471 kb on - strand at 4730.474 kb on + strand at 4730.474 kb on + strand at 4730.474 kb on + strand at 4730.474 kb on + strand at 4730.474 kb on + strand at 4730.474 kb on + strand at 4730.474 kb on + strand at 4730.474 kb on + strand at 4730.474 kb on + strand at 4730.474 kb on + strand at 4730.474 kb on + strand at 4730.474 kb on + strand at 4730.474 kb on + strand at 4730.474 kb on + strand at 4730.474 kb on + strand at 4730.474 kb on + strand at 4730.474 kb on + strand at 4730.474 kb on + strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.475 kb on - strand at 4730.507 kb on + strand at 4730.507 kb on + strand at 4730.508 kb on - strand at 4730.637 kb on + strand at 4730.787 kb on + strand at 4730.878 kb on + strand, within Psyr_3979 at 4730.878 kb on + strand, within Psyr_3979 at 4730.878 kb on + strand, within Psyr_3979 at 4730.878 kb on + strand, within Psyr_3979 at 4730.879 kb on - strand, within Psyr_3979 at 4730.879 kb on - strand, within Psyr_3979 at 4730.879 kb on - strand, within Psyr_3979 at 4731.005 kb on - strand, within Psyr_3979 at 4731.079 kb on - strand, within Psyr_3979 at 4731.079 kb on - strand, within Psyr_3979 at 4731.176 kb on - strand, within Psyr_3979
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml remove 4,727,675 + Psyr_3977 0.80 +0.4 4,727,675 + Psyr_3977 0.80 +0.3 4,727,675 + Psyr_3977 0.80 +0.1 4,727,675 + Psyr_3977 0.80 -1.0 4,727,676 - Psyr_3977 0.80 -0.3 4,727,676 - Psyr_3977 0.80 +0.0 4,727,738 - Psyr_3977 0.82 +0.5 4,727,773 + Psyr_3977 0.82 +0.2 4,727,773 + Psyr_3977 0.82 +0.7 4,727,773 + Psyr_3977 0.82 +0.5 4,727,774 - Psyr_3977 0.82 -0.1 4,727,792 + Psyr_3977 0.83 +0.5 4,727,793 - Psyr_3977 0.83 +1.1 4,727,819 + Psyr_3977 0.83 +0.0 4,727,820 - Psyr_3977 0.83 -0.4 4,727,879 + Psyr_3977 0.85 +0.9 4,727,879 + Psyr_3977 0.85 +0.7 4,727,879 + Psyr_3977 0.85 +1.1 4,727,880 - Psyr_3977 0.85 +0.2 4,727,933 + Psyr_3977 0.86 +0.5 4,727,933 + Psyr_3977 0.86 +1.4 4,727,934 - Psyr_3977 0.86 -0.2 4,727,934 - Psyr_3977 0.86 -0.1 4,727,934 - Psyr_3977 0.86 +0.2 4,727,934 - Psyr_3977 0.86 +0.5 4,727,946 - Psyr_3977 0.86 +0.5 4,728,209 - -0.7 4,728,519 + -1.3 4,728,519 + +0.7 4,728,639 - -1.9 4,728,650 - -0.4 4,728,769 + +0.6 4,728,770 - -1.0 4,728,844 - Psyr_3978 0.14 +1.5 4,728,844 - Psyr_3978 0.14 -2.5 4,728,886 + Psyr_3978 0.16 +0.3 4,728,886 + Psyr_3978 0.16 +0.1 4,728,892 + Psyr_3978 0.16 -0.7 4,728,893 - Psyr_3978 0.16 +2.1 4,729,205 + Psyr_3978 0.34 +0.0 4,729,274 + Psyr_3978 0.37 +0.5 4,729,275 - Psyr_3978 0.37 +0.8 4,729,312 + Psyr_3978 0.40 +0.1 4,729,313 - Psyr_3978 0.40 +0.5 4,729,525 + Psyr_3978 0.51 +0.9 4,729,525 + Psyr_3978 0.51 -0.2 4,729,526 - Psyr_3978 0.51 -0.7 4,729,650 + Psyr_3978 0.58 -0.0 4,729,666 + Psyr_3978 0.59 -0.3 4,729,728 - Psyr_3978 0.62 +1.0 4,729,804 + Psyr_3978 0.67 +0.5 4,729,807 + Psyr_3978 0.67 -0.5 4,729,808 - Psyr_3978 0.67 -0.0 4,729,835 - Psyr_3978 0.68 -2.0 4,729,922 - Psyr_3978 0.73 +0.6 4,730,144 - Psyr_3978 0.85 +0.3 4,730,144 - Psyr_3978 0.85 -0.6 4,730,342 - +0.3 4,730,408 - -1.0 4,730,471 - +0.3 4,730,474 + +0.0 4,730,474 + -0.3 4,730,474 + -0.3 4,730,474 + -0.7 4,730,474 + +0.7 4,730,474 + -3.5 4,730,474 + +0.3 4,730,474 + +0.2 4,730,474 + -0.1 4,730,474 + +0.5 4,730,474 + -1.8 4,730,474 + -0.7 4,730,474 + +0.5 4,730,474 + -1.5 4,730,474 + +0.3 4,730,474 + -0.3 4,730,474 + +0.3 4,730,474 + +1.2 4,730,475 - +0.5 4,730,475 - +0.1 4,730,475 - +0.5 4,730,475 - +0.5 4,730,475 - +0.5 4,730,475 - -0.5 4,730,475 - +1.1 4,730,475 - -0.2 4,730,475 - -1.5 4,730,475 - -0.0 4,730,475 - +1.0 4,730,475 - -1.3 4,730,475 - +0.0 4,730,475 - +0.2 4,730,475 - -0.3 4,730,475 - -0.3 4,730,475 - +0.5 4,730,475 - -0.1 4,730,475 - -0.1 4,730,475 - +0.5 4,730,475 - -0.4 4,730,475 - +1.5 4,730,475 - +1.0 4,730,475 - +0.1 4,730,475 - +1.2 4,730,475 - -0.3 4,730,475 - +1.8 4,730,507 + +0.5 4,730,507 + -0.4 4,730,508 - +0.0 4,730,637 + -0.6 4,730,787 + -0.4 4,730,878 + Psyr_3979 0.10 -0.2 4,730,878 + Psyr_3979 0.10 -0.5 4,730,878 + Psyr_3979 0.10 +1.4 4,730,878 + Psyr_3979 0.10 -0.4 4,730,879 - Psyr_3979 0.10 +0.7 4,730,879 - Psyr_3979 0.10 -1.3 4,730,879 - Psyr_3979 0.10 -0.0 4,731,005 - Psyr_3979 0.14 -0.4 4,731,079 - Psyr_3979 0.16 +0.6 4,731,079 - Psyr_3979 0.16 +0.1 4,731,176 - Psyr_3979 0.19 -0.4
Or see this region's nucleotide sequence