Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2917

Experiment: KB with Rotenone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2916 and Psyr_2917 are separated by 73 nucleotidesPsyr_2917 and Psyr_2918 are separated by 43 nucleotides Psyr_2916: Psyr_2916 - Substrate-binding region of ABC-type glycine betaine transport system, at 3,504,820 to 3,505,764 _2916 Psyr_2917: Psyr_2917 - Prokaryotic protein of unknown function DUF849, at 3,505,838 to 3,506,725 _2917 Psyr_2918: Psyr_2918 - 3-hydroxyacyl-CoA dehydrogenase, C-terminal:3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein, at 3,506,769 to 3,507,725 _2918 Position (kb) 3505 3506 3507Strain fitness (log2 ratio) -1 0 1 2at 3504.884 kb on + strandat 3504.885 kb on - strandat 3504.929 kb on + strand, within Psyr_2916at 3504.930 kb on - strand, within Psyr_2916at 3504.994 kb on + strand, within Psyr_2916at 3505.189 kb on + strand, within Psyr_2916at 3505.189 kb on + strand, within Psyr_2916at 3505.189 kb on + strand, within Psyr_2916at 3505.189 kb on + strand, within Psyr_2916at 3505.465 kb on + strand, within Psyr_2916at 3505.465 kb on + strand, within Psyr_2916at 3505.466 kb on - strand, within Psyr_2916at 3505.466 kb on - strand, within Psyr_2916at 3505.826 kb on - strandat 3505.908 kb on + strandat 3506.258 kb on - strand, within Psyr_2917at 3506.258 kb on - strand, within Psyr_2917at 3506.261 kb on + strand, within Psyr_2917at 3506.261 kb on + strand, within Psyr_2917at 3506.261 kb on + strand, within Psyr_2917at 3506.261 kb on + strand, within Psyr_2917at 3506.261 kb on + strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.710 kb on + strandat 3506.739 kb on + strandat 3506.739 kb on + strandat 3506.739 kb on + strandat 3506.739 kb on + strandat 3506.740 kb on - strandat 3506.777 kb on + strandat 3507.109 kb on + strand, within Psyr_2918at 3507.110 kb on - strand, within Psyr_2918at 3507.122 kb on + strand, within Psyr_2918at 3507.123 kb on - strand, within Psyr_2918at 3507.207 kb on + strand, within Psyr_2918at 3507.246 kb on - strand, within Psyr_2918at 3507.246 kb on - strand, within Psyr_2918at 3507.282 kb on + strand, within Psyr_2918at 3507.282 kb on + strand, within Psyr_2918at 3507.283 kb on - strand, within Psyr_2918at 3507.361 kb on + strand, within Psyr_2918at 3507.477 kb on + strand, within Psyr_2918at 3507.555 kb on + strand, within Psyr_2918at 3507.556 kb on - strand, within Psyr_2918at 3507.556 kb on - strand, within Psyr_2918at 3507.634 kb on + strandat 3507.635 kb on + strandat 3507.635 kb on + strandat 3507.635 kb on + strandat 3507.635 kb on + strandat 3507.635 kb on + strandat 3507.635 kb on + strandat 3507.635 kb on + strandat 3507.635 kb on + strandat 3507.636 kb on - strandat 3507.636 kb on - strandat 3507.636 kb on - strandat 3507.699 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml
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3,504,884 + -1.2
3,504,885 - +0.4
3,504,929 + Psyr_2916 0.12 -1.6
3,504,930 - Psyr_2916 0.12 +0.1
3,504,994 + Psyr_2916 0.18 -1.3
3,505,189 + Psyr_2916 0.39 -0.2
3,505,189 + Psyr_2916 0.39 -0.3
3,505,189 + Psyr_2916 0.39 +1.2
3,505,189 + Psyr_2916 0.39 -0.7
3,505,465 + Psyr_2916 0.68 +1.1
3,505,465 + Psyr_2916 0.68 +0.3
3,505,466 - Psyr_2916 0.68 -0.3
3,505,466 - Psyr_2916 0.68 -0.4
3,505,826 - -0.9
3,505,908 + -0.5
3,506,258 - Psyr_2917 0.47 +0.8
3,506,258 - Psyr_2917 0.47 +0.6
3,506,261 + Psyr_2917 0.48 -0.7
3,506,261 + Psyr_2917 0.48 +1.2
3,506,261 + Psyr_2917 0.48 +1.1
3,506,261 + Psyr_2917 0.48 +0.3
3,506,261 + Psyr_2917 0.48 -0.8
3,506,262 - Psyr_2917 0.48 +0.6
3,506,262 - Psyr_2917 0.48 -0.3
3,506,262 - Psyr_2917 0.48 +0.5
3,506,262 - Psyr_2917 0.48 +0.0
3,506,262 - Psyr_2917 0.48 -0.2
3,506,262 - Psyr_2917 0.48 -1.2
3,506,262 - Psyr_2917 0.48 +0.9
3,506,262 - Psyr_2917 0.48 +0.4
3,506,262 - Psyr_2917 0.48 +0.9
3,506,262 - Psyr_2917 0.48 -0.2
3,506,262 - Psyr_2917 0.48 -0.0
3,506,262 - Psyr_2917 0.48 +0.3
3,506,262 - Psyr_2917 0.48 +0.2
3,506,262 - Psyr_2917 0.48 +0.4
3,506,710 + +0.4
3,506,739 + +0.1
3,506,739 + +0.7
3,506,739 + +0.8
3,506,739 + -0.1
3,506,740 - -1.1
3,506,777 + -0.0
3,507,109 + Psyr_2918 0.36 +0.4
3,507,110 - Psyr_2918 0.36 +0.5
3,507,122 + Psyr_2918 0.37 +1.5
3,507,123 - Psyr_2918 0.37 +0.8
3,507,207 + Psyr_2918 0.46 -0.6
3,507,246 - Psyr_2918 0.50 -0.1
3,507,246 - Psyr_2918 0.50 -0.9
3,507,282 + Psyr_2918 0.54 +0.4
3,507,282 + Psyr_2918 0.54 +1.9
3,507,283 - Psyr_2918 0.54 -0.1
3,507,361 + Psyr_2918 0.62 +1.0
3,507,477 + Psyr_2918 0.74 +1.8
3,507,555 + Psyr_2918 0.82 +1.4
3,507,556 - Psyr_2918 0.82 +0.1
3,507,556 - Psyr_2918 0.82 +0.1
3,507,634 + +0.4
3,507,635 + -0.7
3,507,635 + -0.3
3,507,635 + -1.6
3,507,635 + +0.6
3,507,635 + -0.7
3,507,635 + +1.1
3,507,635 + +0.2
3,507,635 + +0.4
3,507,636 - +0.8
3,507,636 - -0.1
3,507,636 - -0.8
3,507,699 - +0.2

Or see this region's nucleotide sequence