Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2691

Experiment: KB with Rotenone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2690 and Psyr_2691 overlap by 4 nucleotidesPsyr_2691 and Psyr_2692 overlap by 1 nucleotidesPsyr_2692 and Psyr_2693 overlap by 4 nucleotides Psyr_2690: Psyr_2690 - Glycosyl transferase, family 2, at 3,266,168 to 3,267,181 _2690 Psyr_2691: Psyr_2691 - Formyl transferase, N-terminal:Formyl transferase, C-terminal, at 3,267,178 to 3,269,172 _2691 Psyr_2692: Psyr_2692 - Polysaccharide deacetylase, at 3,269,172 to 3,270,053 _2692 Psyr_2693: Psyr_2693 - Glycosyl transferase, family 39, at 3,270,050 to 3,271,702 _2693 Position (kb) 3267 3268 3269 3270Strain fitness (log2 ratio) -2 -1 0 1at 3266.213 kb on + strandat 3266.214 kb on - strandat 3266.396 kb on + strand, within Psyr_2690at 3266.397 kb on - strand, within Psyr_2690at 3266.798 kb on + strand, within Psyr_2690at 3266.799 kb on - strand, within Psyr_2690at 3267.059 kb on + strand, within Psyr_2690at 3267.060 kb on - strand, within Psyr_2690at 3267.060 kb on - strand, within Psyr_2690at 3267.150 kb on + strandat 3267.158 kb on + strandat 3267.159 kb on - strandat 3267.159 kb on - strandat 3267.159 kb on - strandat 3267.159 kb on - strandat 3267.160 kb on + strandat 3267.160 kb on + strandat 3267.161 kb on - strandat 3267.161 kb on - strandat 3267.161 kb on - strandat 3267.186 kb on + strandat 3267.186 kb on + strandat 3267.254 kb on - strandat 3267.430 kb on + strand, within Psyr_2691at 3267.430 kb on + strand, within Psyr_2691at 3267.430 kb on + strand, within Psyr_2691at 3267.431 kb on - strand, within Psyr_2691at 3267.431 kb on - strand, within Psyr_2691at 3267.444 kb on - strand, within Psyr_2691at 3267.776 kb on - strand, within Psyr_2691at 3267.838 kb on + strand, within Psyr_2691at 3267.839 kb on - strand, within Psyr_2691at 3267.839 kb on - strand, within Psyr_2691at 3267.839 kb on - strand, within Psyr_2691at 3267.840 kb on + strand, within Psyr_2691at 3268.045 kb on + strand, within Psyr_2691at 3268.046 kb on - strand, within Psyr_2691at 3268.046 kb on - strand, within Psyr_2691at 3268.046 kb on - strand, within Psyr_2691at 3268.381 kb on + strand, within Psyr_2691at 3268.381 kb on + strand, within Psyr_2691at 3268.456 kb on + strand, within Psyr_2691at 3268.457 kb on - strand, within Psyr_2691at 3268.457 kb on - strand, within Psyr_2691at 3268.457 kb on - strand, within Psyr_2691at 3268.496 kb on - strand, within Psyr_2691at 3268.576 kb on + strand, within Psyr_2691at 3269.011 kb on + strandat 3269.011 kb on + strandat 3269.012 kb on - strandat 3269.012 kb on - strandat 3269.376 kb on + strand, within Psyr_2692at 3269.376 kb on + strand, within Psyr_2692at 3269.557 kb on + strand, within Psyr_2692at 3269.558 kb on - strand, within Psyr_2692at 3269.780 kb on - strand, within Psyr_2692at 3269.780 kb on - strand, within Psyr_2692at 3269.817 kb on + strand, within Psyr_2692at 3269.817 kb on + strand, within Psyr_2692at 3269.817 kb on + strand, within Psyr_2692at 3269.817 kb on + strand, within Psyr_2692at 3269.817 kb on + strand, within Psyr_2692at 3269.857 kb on - strand, within Psyr_2692at 3269.857 kb on - strand, within Psyr_2692at 3269.914 kb on + strand, within Psyr_2692at 3270.055 kb on - strandat 3270.055 kb on - strandat 3270.107 kb on + strandat 3270.108 kb on - strandat 3270.108 kb on - strandat 3270.159 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml
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3,266,213 + -0.8
3,266,214 - +0.4
3,266,396 + Psyr_2690 0.22 -0.1
3,266,397 - Psyr_2690 0.23 -2.4
3,266,798 + Psyr_2690 0.62 +0.3
3,266,799 - Psyr_2690 0.62 +1.7
3,267,059 + Psyr_2690 0.88 +0.2
3,267,060 - Psyr_2690 0.88 -1.5
3,267,060 - Psyr_2690 0.88 -1.7
3,267,150 + -0.4
3,267,158 + +0.7
3,267,159 - +0.3
3,267,159 - -0.2
3,267,159 - -0.1
3,267,159 - +0.8
3,267,160 + +0.5
3,267,160 + -0.1
3,267,161 - -0.2
3,267,161 - -0.8
3,267,161 - -0.5
3,267,186 + -2.3
3,267,186 + -0.2
3,267,254 - +0.1
3,267,430 + Psyr_2691 0.13 -0.2
3,267,430 + Psyr_2691 0.13 +0.1
3,267,430 + Psyr_2691 0.13 +0.0
3,267,431 - Psyr_2691 0.13 -0.1
3,267,431 - Psyr_2691 0.13 -0.9
3,267,444 - Psyr_2691 0.13 +0.8
3,267,776 - Psyr_2691 0.30 +0.8
3,267,838 + Psyr_2691 0.33 -0.1
3,267,839 - Psyr_2691 0.33 +1.3
3,267,839 - Psyr_2691 0.33 -0.5
3,267,839 - Psyr_2691 0.33 -1.0
3,267,840 + Psyr_2691 0.33 -0.4
3,268,045 + Psyr_2691 0.43 -1.9
3,268,046 - Psyr_2691 0.44 +0.3
3,268,046 - Psyr_2691 0.44 +0.5
3,268,046 - Psyr_2691 0.44 +0.3
3,268,381 + Psyr_2691 0.60 -0.2
3,268,381 + Psyr_2691 0.60 +0.1
3,268,456 + Psyr_2691 0.64 +0.7
3,268,457 - Psyr_2691 0.64 -2.3
3,268,457 - Psyr_2691 0.64 -1.5
3,268,457 - Psyr_2691 0.64 -2.0
3,268,496 - Psyr_2691 0.66 -1.5
3,268,576 + Psyr_2691 0.70 -0.8
3,269,011 + -0.5
3,269,011 + -0.3
3,269,012 - -0.4
3,269,012 - -1.1
3,269,376 + Psyr_2692 0.23 -0.9
3,269,376 + Psyr_2692 0.23 +0.6
3,269,557 + Psyr_2692 0.44 -0.9
3,269,558 - Psyr_2692 0.44 +0.8
3,269,780 - Psyr_2692 0.69 -0.4
3,269,780 - Psyr_2692 0.69 +0.6
3,269,817 + Psyr_2692 0.73 +0.1
3,269,817 + Psyr_2692 0.73 +0.1
3,269,817 + Psyr_2692 0.73 -0.1
3,269,817 + Psyr_2692 0.73 +0.5
3,269,817 + Psyr_2692 0.73 +0.3
3,269,857 - Psyr_2692 0.78 -0.4
3,269,857 - Psyr_2692 0.78 -1.5
3,269,914 + Psyr_2692 0.84 -1.5
3,270,055 - -0.5
3,270,055 - -0.1
3,270,107 + +0.7
3,270,108 - -0.5
3,270,108 - +0.3
3,270,159 - -0.3

Or see this region's nucleotide sequence