Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF861

Experiment: LB_plus_SM_buffer with 6D2_phage 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF860 and GFF861 are separated by 295 nucleotidesGFF861 and GFF862 are separated by 111 nucleotidesGFF862 and GFF863 are separated by 102 nucleotides GFF860 - FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8), at 37,281 to 37,901 GFF860 GFF861 - D-serine/D-alanine/glycine transporter, at 38,197 to 39,606 GFF861 GFF862 - Nitric oxide-dependent regulator DnrN or NorA, at 39,718 to 40,380 GFF862 GFF863 - Putative membrane protein, at 40,483 to 41,448 GFF863 Position (kb) 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1at 37.280 kb on - strandat 37.323 kb on + strandat 37.425 kb on - strand, within GFF860at 37.592 kb on - strand, within GFF860at 37.648 kb on + strand, within GFF860at 37.660 kb on - strand, within GFF860at 37.660 kb on - strand, within GFF860at 37.802 kb on + strand, within GFF860at 37.930 kb on - strandat 38.036 kb on - strandat 38.080 kb on + strandat 38.102 kb on + strandat 38.107 kb on - strandat 38.125 kb on + strandat 38.139 kb on + strandat 38.144 kb on + strandat 38.144 kb on + strandat 38.145 kb on - strandat 38.145 kb on - strandat 38.183 kb on - strandat 38.201 kb on + strandat 38.265 kb on + strandat 38.277 kb on + strandat 38.279 kb on + strandat 38.280 kb on - strandat 38.286 kb on + strandat 38.334 kb on + strandat 38.376 kb on + strand, within GFF861at 38.376 kb on + strand, within GFF861at 38.541 kb on + strand, within GFF861at 38.637 kb on - strand, within GFF861at 38.637 kb on - strand, within GFF861at 38.896 kb on - strand, within GFF861at 38.974 kb on + strand, within GFF861at 38.997 kb on + strand, within GFF861at 39.205 kb on - strand, within GFF861at 39.210 kb on - strand, within GFF861at 39.252 kb on + strand, within GFF861at 39.252 kb on + strand, within GFF861at 39.253 kb on - strand, within GFF861at 39.276 kb on + strand, within GFF861at 39.345 kb on + strand, within GFF861at 39.345 kb on + strand, within GFF861at 39.386 kb on - strand, within GFF861at 39.424 kb on + strand, within GFF861at 39.427 kb on - strand, within GFF861at 39.488 kb on + strandat 39.489 kb on - strandat 39.492 kb on - strandat 39.575 kb on + strandat 39.580 kb on - strandat 39.643 kb on - strandat 39.649 kb on + strandat 39.809 kb on + strand, within GFF862at 39.809 kb on + strand, within GFF862at 39.810 kb on - strand, within GFF862at 39.851 kb on - strand, within GFF862at 39.993 kb on + strand, within GFF862at 39.994 kb on - strand, within GFF862at 40.155 kb on + strand, within GFF862at 40.156 kb on - strand, within GFF862at 40.228 kb on + strand, within GFF862at 40.229 kb on - strand, within GFF862at 40.229 kb on - strand, within GFF862at 40.229 kb on - strand, within GFF862at 40.229 kb on - strand, within GFF862at 40.303 kb on - strand, within GFF862at 40.461 kb on + strandat 40.462 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 0.75 MOI
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37,280 - -0.1
37,323 + -3.0
37,425 - GFF860 0.23 -1.2
37,592 - GFF860 0.50 -0.1
37,648 + GFF860 0.59 +0.2
37,660 - GFF860 0.61 -0.1
37,660 - GFF860 0.61 -1.2
37,802 + GFF860 0.84 -0.2
37,930 - -0.4
38,036 - -0.1
38,080 + -0.1
38,102 + +0.3
38,107 - +0.1
38,125 + +0.0
38,139 + -0.1
38,144 + -0.0
38,144 + +0.3
38,145 - +0.3
38,145 - +0.3
38,183 - +0.1
38,201 + +0.4
38,265 + +0.6
38,277 + +0.1
38,279 + +0.1
38,280 - +0.7
38,286 + +0.2
38,334 + -0.5
38,376 + GFF861 0.13 +0.1
38,376 + GFF861 0.13 -0.2
38,541 + GFF861 0.24 -0.1
38,637 - GFF861 0.31 +0.5
38,637 - GFF861 0.31 +1.1
38,896 - GFF861 0.50 +1.1
38,974 + GFF861 0.55 -0.3
38,997 + GFF861 0.57 -0.3
39,205 - GFF861 0.71 +0.9
39,210 - GFF861 0.72 -0.2
39,252 + GFF861 0.75 +0.4
39,252 + GFF861 0.75 +0.6
39,253 - GFF861 0.75 -0.6
39,276 + GFF861 0.77 +0.0
39,345 + GFF861 0.81 +0.6
39,345 + GFF861 0.81 +0.2
39,386 - GFF861 0.84 -1.0
39,424 + GFF861 0.87 -0.6
39,427 - GFF861 0.87 -0.5
39,488 + +0.2
39,489 - -0.7
39,492 - -0.4
39,575 + -0.5
39,580 - +0.3
39,643 - +0.2
39,649 + -0.5
39,809 + GFF862 0.14 -0.0
39,809 + GFF862 0.14 +1.0
39,810 - GFF862 0.14 -0.5
39,851 - GFF862 0.20 +0.1
39,993 + GFF862 0.41 +0.2
39,994 - GFF862 0.42 +0.3
40,155 + GFF862 0.66 -0.1
40,156 - GFF862 0.66 -0.0
40,228 + GFF862 0.77 +0.1
40,229 - GFF862 0.77 -0.3
40,229 - GFF862 0.77 -0.5
40,229 - GFF862 0.77 +0.2
40,229 - GFF862 0.77 -0.4
40,303 - GFF862 0.88 -0.6
40,461 + +0.7
40,462 - +0.1

Or see this region's nucleotide sequence