Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4851

Experiment: LB_plus_SM_buffer with 6D2_phage 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4850 and GFF4851 overlap by 4 nucleotidesGFF4851 and GFF4852 are separated by 448 nucleotides GFF4850 - Decarboxylase family protein, at 148,808 to 150,172 GFF4850 GFF4851 - hypothetical protein, at 150,169 to 150,288 GFF4851 GFF4852 - Serine transporter, at 150,737 to 152,026 GFF4852 Position (kb) 150 151Strain fitness (log2 ratio) -3 -2 -1 0 1at 149.334 kb on + strand, within GFF4850at 149.561 kb on - strand, within GFF4850at 149.606 kb on + strand, within GFF4850at 149.722 kb on + strand, within GFF4850at 149.722 kb on + strand, within GFF4850at 149.854 kb on + strand, within GFF4850at 149.915 kb on - strand, within GFF4850at 150.143 kb on + strandat 150.143 kb on + strandat 150.143 kb on + strandat 150.143 kb on + strandat 150.245 kb on - strand, within GFF4851at 150.462 kb on + strandat 150.463 kb on - strandat 150.517 kb on - strandat 150.522 kb on - strandat 150.543 kb on + strandat 150.760 kb on + strandat 150.761 kb on - strandat 151.039 kb on + strand, within GFF4852at 151.050 kb on - strand, within GFF4852at 151.100 kb on - strand, within GFF4852at 151.235 kb on - strand, within GFF4852at 151.235 kb on - strand, within GFF4852at 151.281 kb on - strand, within GFF4852

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 0.75 MOI
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149,334 + GFF4850 0.39 -0.5
149,561 - GFF4850 0.55 -0.6
149,606 + GFF4850 0.58 +0.3
149,722 + GFF4850 0.67 -0.8
149,722 + GFF4850 0.67 +0.1
149,854 + GFF4850 0.77 -0.7
149,915 - GFF4850 0.81 -0.2
150,143 + -0.1
150,143 + +0.7
150,143 + -1.0
150,143 + -0.2
150,245 - GFF4851 0.63 +0.1
150,462 + -0.1
150,463 - +0.1
150,517 - +0.2
150,522 - -0.5
150,543 + -0.1
150,760 + -2.4
150,761 - -0.4
151,039 + GFF4852 0.23 -0.4
151,050 - GFF4852 0.24 -1.4
151,100 - GFF4852 0.28 -2.8
151,235 - GFF4852 0.39 -1.3
151,235 - GFF4852 0.39 -1.8
151,281 - GFF4852 0.42 -1.3

Or see this region's nucleotide sequence