Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4774

Experiment: LB_plus_SM_buffer with 6D2_phage 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4773 and GFF4774 are separated by 55 nucleotidesGFF4774 and GFF4775 overlap by 4 nucleotides GFF4773 - DNA mismatch repair protein MutS, at 80,062 to 82,629 GFF4773 GFF4774 - FIG074102: hypothetical protein, at 82,685 to 83,065 GFF4774 GFF4775 - Possible membrane transport protein, at 83,062 to 84,270 GFF4775 Position (kb) 82 83 84Strain fitness (log2 ratio) -1 0 1at 81.693 kb on - strand, within GFF4773at 81.767 kb on - strand, within GFF4773at 81.784 kb on - strand, within GFF4773at 81.934 kb on + strand, within GFF4773at 81.935 kb on - strand, within GFF4773at 81.971 kb on - strand, within GFF4773at 82.113 kb on + strand, within GFF4773at 82.171 kb on + strand, within GFF4773at 82.171 kb on + strand, within GFF4773at 82.225 kb on - strand, within GFF4773at 82.253 kb on - strand, within GFF4773at 82.330 kb on - strand, within GFF4773at 83.008 kb on + strand, within GFF4774at 83.055 kb on + strandat 83.120 kb on + strandat 83.121 kb on - strandat 83.157 kb on + strandat 83.158 kb on - strandat 83.305 kb on - strand, within GFF4775at 83.305 kb on - strand, within GFF4775at 83.416 kb on + strand, within GFF4775at 83.426 kb on - strand, within GFF4775at 83.589 kb on - strand, within GFF4775at 83.623 kb on - strand, within GFF4775at 83.941 kb on + strand, within GFF4775at 83.967 kb on + strand, within GFF4775at 83.990 kb on - strand, within GFF4775

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 0.75 MOI
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81,693 - GFF4773 0.64 -0.3
81,767 - GFF4773 0.66 +0.1
81,784 - GFF4773 0.67 -1.2
81,934 + GFF4773 0.73 -1.6
81,935 - GFF4773 0.73 -0.8
81,971 - GFF4773 0.74 +0.4
82,113 + GFF4773 0.80 -0.5
82,171 + GFF4773 0.82 -0.5
82,171 + GFF4773 0.82 +0.2
82,225 - GFF4773 0.84 +0.1
82,253 - GFF4773 0.85 -0.1
82,330 - GFF4773 0.88 +0.0
83,008 + GFF4774 0.85 -0.9
83,055 + +0.2
83,120 + -0.0
83,121 - +0.2
83,157 + -1.2
83,158 - -0.1
83,305 - GFF4775 0.20 -0.5
83,305 - GFF4775 0.20 -0.0
83,416 + GFF4775 0.29 -0.6
83,426 - GFF4775 0.30 +0.3
83,589 - GFF4775 0.44 +0.0
83,623 - GFF4775 0.46 -1.1
83,941 + GFF4775 0.73 -0.1
83,967 + GFF4775 0.75 -0.1
83,990 - GFF4775 0.77 -0.2

Or see this region's nucleotide sequence