Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4346

Experiment: LB_plus_SM_buffer with 6D2_phage 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4345 and GFF4346 are separated by 10 nucleotidesGFF4346 and GFF4347 are separated by 273 nucleotidesGFF4347 and GFF4348 are separated by 83 nucleotides GFF4345 - Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-), at 125,401 to 127,392 GFF4345 GFF4346 - Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-), at 127,403 to 128,332 GFF4346 GFF4347 - hypothetical protein, at 128,606 to 128,728 GFF4347 GFF4348 - AmpG permease, at 128,812 to 130,287 GFF4348 Position (kb) 127 128 129Strain fitness (log2 ratio) -2 -1 0 1 2at 126.569 kb on + strand, within GFF4345at 126.569 kb on + strand, within GFF4345at 126.569 kb on + strand, within GFF4345at 126.570 kb on - strand, within GFF4345at 126.620 kb on + strand, within GFF4345at 126.792 kb on + strand, within GFF4345at 126.843 kb on + strand, within GFF4345at 126.851 kb on + strand, within GFF4345at 126.851 kb on + strand, within GFF4345at 126.852 kb on - strand, within GFF4345at 126.852 kb on - strand, within GFF4345at 127.210 kb on - strandat 127.211 kb on + strandat 127.211 kb on + strandat 127.212 kb on - strandat 127.212 kb on - strandat 127.212 kb on - strandat 127.212 kb on - strandat 127.212 kb on - strandat 127.231 kb on - strandat 127.266 kb on - strandat 127.276 kb on - strandat 127.348 kb on - strandat 127.394 kb on + strandat 127.395 kb on + strandat 127.395 kb on + strandat 127.396 kb on - strandat 127.396 kb on - strandat 127.444 kb on + strandat 127.445 kb on - strandat 127.445 kb on - strandat 127.529 kb on - strand, within GFF4346at 127.529 kb on - strand, within GFF4346at 127.566 kb on + strand, within GFF4346at 127.567 kb on - strand, within GFF4346at 127.595 kb on - strand, within GFF4346at 127.618 kb on + strand, within GFF4346at 127.693 kb on + strand, within GFF4346at 127.752 kb on + strand, within GFF4346at 127.752 kb on + strand, within GFF4346at 127.810 kb on - strand, within GFF4346at 127.936 kb on - strand, within GFF4346at 128.127 kb on + strand, within GFF4346at 128.127 kb on + strand, within GFF4346at 128.143 kb on + strand, within GFF4346at 128.316 kb on - strandat 128.338 kb on + strandat 128.429 kb on + strandat 128.481 kb on + strandat 128.493 kb on + strandat 128.493 kb on + strandat 128.509 kb on + strandat 128.774 kb on + strandat 128.813 kb on + strandat 128.925 kb on + strandat 128.930 kb on + strandat 129.064 kb on - strand, within GFF4348at 129.064 kb on - strand, within GFF4348at 129.064 kb on - strand, within GFF4348at 129.065 kb on + strand, within GFF4348at 129.066 kb on - strand, within GFF4348at 129.066 kb on - strand, within GFF4348at 129.250 kb on - strand, within GFF4348at 129.250 kb on - strand, within GFF4348at 129.253 kb on - strand, within GFF4348at 129.253 kb on - strand, within GFF4348

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 0.75 MOI
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126,569 + GFF4345 0.59 +0.5
126,569 + GFF4345 0.59 -0.2
126,569 + GFF4345 0.59 -0.5
126,570 - GFF4345 0.59 +0.1
126,620 + GFF4345 0.61 +0.2
126,792 + GFF4345 0.70 +0.6
126,843 + GFF4345 0.72 +0.4
126,851 + GFF4345 0.73 +0.3
126,851 + GFF4345 0.73 +0.5
126,852 - GFF4345 0.73 +0.5
126,852 - GFF4345 0.73 +0.7
127,210 - +0.7
127,211 + -0.1
127,211 + +0.5
127,212 - +0.6
127,212 - +0.9
127,212 - +1.4
127,212 - +0.7
127,212 - +1.3
127,231 - +0.5
127,266 - +1.2
127,276 - -0.9
127,348 - +0.9
127,394 + +0.3
127,395 + +0.3
127,395 + +0.5
127,396 - +0.8
127,396 - +0.4
127,444 + +1.0
127,445 - +0.3
127,445 - +0.5
127,529 - GFF4346 0.14 +0.4
127,529 - GFF4346 0.14 +0.4
127,566 + GFF4346 0.18 +0.4
127,567 - GFF4346 0.18 +1.1
127,595 - GFF4346 0.21 +0.7
127,618 + GFF4346 0.23 +1.0
127,693 + GFF4346 0.31 +0.5
127,752 + GFF4346 0.38 +0.1
127,752 + GFF4346 0.38 +0.1
127,810 - GFF4346 0.44 -0.5
127,936 - GFF4346 0.57 +0.8
128,127 + GFF4346 0.78 +0.2
128,127 + GFF4346 0.78 -0.6
128,143 + GFF4346 0.80 +2.6
128,316 - -2.6
128,338 + +0.2
128,429 + +0.3
128,481 + +0.3
128,493 + +0.6
128,493 + -0.9
128,509 + -1.0
128,774 + +0.7
128,813 + +0.1
128,925 + -1.7
128,930 + -0.9
129,064 - GFF4348 0.17 -0.0
129,064 - GFF4348 0.17 +0.4
129,064 - GFF4348 0.17 -0.1
129,065 + GFF4348 0.17 +0.1
129,066 - GFF4348 0.17 +0.0
129,066 - GFF4348 0.17 +0.8
129,250 - GFF4348 0.30 -2.4
129,250 - GFF4348 0.30 -0.7
129,253 - GFF4348 0.30 +0.2
129,253 - GFF4348 0.30 +0.2

Or see this region's nucleotide sequence