Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF254

Experiment: LB_plus_SM_buffer with 6D2_phage 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF253 and GFF254 are separated by 248 nucleotidesGFF254 and GFF255 are separated by 63 nucleotidesGFF255 and GFF256 are separated by 199 nucleotides GFF253 - Transcriptional activator MetR, at 27,394 to 28,347 GFF253 GFF254 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (EC 2.1.1.14), at 28,596 to 30,860 GFF254 GFF255 - hypothetical protein, at 30,924 to 31,052 GFF255 GFF256 - Putative arylsulfatase regulatory protein, at 31,252 to 32,547 GFF256 Position (kb) 28 29 30 31Strain fitness (log2 ratio) -1 0 1at 27.811 kb on - strand, within GFF253at 27.885 kb on - strand, within GFF253at 28.048 kb on - strand, within GFF253at 28.053 kb on + strand, within GFF253at 28.053 kb on + strand, within GFF253at 28.053 kb on + strand, within GFF253at 28.065 kb on + strand, within GFF253at 28.336 kb on - strandat 28.390 kb on + strandat 28.390 kb on + strandat 28.392 kb on + strandat 28.392 kb on + strandat 28.392 kb on + strandat 28.392 kb on + strandat 28.392 kb on + strandat 28.392 kb on + strandat 28.392 kb on + strandat 28.397 kb on + strandat 28.403 kb on + strandat 28.447 kb on - strandat 28.494 kb on - strandat 28.494 kb on - strandat 28.671 kb on + strandat 28.772 kb on - strandat 28.956 kb on - strand, within GFF254at 28.958 kb on + strand, within GFF254at 28.958 kb on + strand, within GFF254at 28.959 kb on - strand, within GFF254at 28.959 kb on - strand, within GFF254at 28.959 kb on - strand, within GFF254at 28.959 kb on - strand, within GFF254at 28.959 kb on - strand, within GFF254at 28.962 kb on + strand, within GFF254at 28.963 kb on - strand, within GFF254at 28.963 kb on - strand, within GFF254at 28.968 kb on + strand, within GFF254at 28.969 kb on + strand, within GFF254at 28.969 kb on - strand, within GFF254at 28.972 kb on + strand, within GFF254at 28.972 kb on + strand, within GFF254at 28.972 kb on + strand, within GFF254at 28.972 kb on + strand, within GFF254at 28.972 kb on + strand, within GFF254at 28.972 kb on + strand, within GFF254at 28.973 kb on - strand, within GFF254at 28.973 kb on - strand, within GFF254at 28.973 kb on - strand, within GFF254at 29.074 kb on + strand, within GFF254at 29.074 kb on + strand, within GFF254at 29.094 kb on + strand, within GFF254at 29.094 kb on + strand, within GFF254at 29.094 kb on + strand, within GFF254at 29.095 kb on - strand, within GFF254at 29.095 kb on - strand, within GFF254at 29.095 kb on - strand, within GFF254at 29.166 kb on + strand, within GFF254at 29.176 kb on + strand, within GFF254at 29.176 kb on + strand, within GFF254at 29.201 kb on + strand, within GFF254at 29.201 kb on + strand, within GFF254at 29.322 kb on + strand, within GFF254at 29.354 kb on + strand, within GFF254at 29.380 kb on + strand, within GFF254at 29.380 kb on + strand, within GFF254at 29.414 kb on - strand, within GFF254at 29.759 kb on + strand, within GFF254at 29.759 kb on + strand, within GFF254at 29.987 kb on + strand, within GFF254at 29.987 kb on + strand, within GFF254at 30.037 kb on + strand, within GFF254at 30.129 kb on + strand, within GFF254at 30.130 kb on - strand, within GFF254at 30.210 kb on + strand, within GFF254at 30.211 kb on - strand, within GFF254at 30.381 kb on - strand, within GFF254at 30.525 kb on + strand, within GFF254at 30.525 kb on + strand, within GFF254at 30.738 kb on - strandat 30.738 kb on - strandat 30.858 kb on + strandat 30.859 kb on - strandat 31.031 kb on - strand, within GFF255at 31.099 kb on + strandat 31.099 kb on + strandat 31.175 kb on + strandat 31.175 kb on + strandat 31.176 kb on - strandat 31.275 kb on - strandat 31.318 kb on + strandat 31.318 kb on + strandat 31.327 kb on + strandat 31.328 kb on - strandat 31.328 kb on - strandat 31.401 kb on + strand, within GFF256at 31.401 kb on + strand, within GFF256at 31.403 kb on + strand, within GFF256at 31.413 kb on + strand, within GFF256at 31.509 kb on - strand, within GFF256at 31.646 kb on + strand, within GFF256at 31.646 kb on + strand, within GFF256at 31.666 kb on - strand, within GFF256at 31.741 kb on - strand, within GFF256at 31.744 kb on - strand, within GFF256at 31.744 kb on - strand, within GFF256at 31.824 kb on + strand, within GFF256at 31.845 kb on - strand, within GFF256

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 0.75 MOI
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27,811 - GFF253 0.44 +0.5
27,885 - GFF253 0.51 +0.2
28,048 - GFF253 0.69 +0.9
28,053 + GFF253 0.69 +0.2
28,053 + GFF253 0.69 +0.5
28,053 + GFF253 0.69 +0.3
28,065 + GFF253 0.70 -1.1
28,336 - +0.3
28,390 + +0.4
28,390 + +0.3
28,392 + -0.5
28,392 + -0.1
28,392 + +0.6
28,392 + +0.6
28,392 + +0.7
28,392 + +0.6
28,392 + -0.4
28,397 + -0.0
28,403 + +0.8
28,447 - +0.1
28,494 - +0.7
28,494 - +0.4
28,671 + -0.2
28,772 - -0.3
28,956 - GFF254 0.16 -0.2
28,958 + GFF254 0.16 -0.5
28,958 + GFF254 0.16 +0.1
28,959 - GFF254 0.16 -0.2
28,959 - GFF254 0.16 -0.9
28,959 - GFF254 0.16 +0.5
28,959 - GFF254 0.16 +1.2
28,959 - GFF254 0.16 -0.0
28,962 + GFF254 0.16 -0.5
28,963 - GFF254 0.16 +0.8
28,963 - GFF254 0.16 -0.7
28,968 + GFF254 0.16 -0.2
28,969 + GFF254 0.16 +0.9
28,969 - GFF254 0.16 +0.4
28,972 + GFF254 0.17 +0.1
28,972 + GFF254 0.17 +0.1
28,972 + GFF254 0.17 +0.1
28,972 + GFF254 0.17 +0.8
28,972 + GFF254 0.17 -0.5
28,972 + GFF254 0.17 -0.2
28,973 - GFF254 0.17 +0.7
28,973 - GFF254 0.17 +0.7
28,973 - GFF254 0.17 -0.2
29,074 + GFF254 0.21 -0.1
29,074 + GFF254 0.21 +1.5
29,094 + GFF254 0.22 +0.1
29,094 + GFF254 0.22 +0.0
29,094 + GFF254 0.22 +0.6
29,095 - GFF254 0.22 +0.5
29,095 - GFF254 0.22 +0.3
29,095 - GFF254 0.22 -0.0
29,166 + GFF254 0.25 +0.0
29,176 + GFF254 0.26 -0.1
29,176 + GFF254 0.26 -0.8
29,201 + GFF254 0.27 -0.4
29,201 + GFF254 0.27 -0.1
29,322 + GFF254 0.32 -0.3
29,354 + GFF254 0.33 -0.8
29,380 + GFF254 0.35 +0.1
29,380 + GFF254 0.35 +0.5
29,414 - GFF254 0.36 +0.2
29,759 + GFF254 0.51 +0.4
29,759 + GFF254 0.51 +0.3
29,987 + GFF254 0.61 +0.4
29,987 + GFF254 0.61 -0.1
30,037 + GFF254 0.64 +0.1
30,129 + GFF254 0.68 +0.6
30,130 - GFF254 0.68 +0.4
30,210 + GFF254 0.71 -0.7
30,211 - GFF254 0.71 +1.4
30,381 - GFF254 0.79 +1.0
30,525 + GFF254 0.85 -0.0
30,525 + GFF254 0.85 +0.1
30,738 - +0.6
30,738 - +0.2
30,858 + +0.2
30,859 - -0.1
31,031 - GFF255 0.83 -0.0
31,099 + +0.2
31,099 + +0.6
31,175 + +0.3
31,175 + -0.2
31,176 - +0.7
31,275 - +0.8
31,318 + +0.0
31,318 + -0.0
31,327 + +0.2
31,328 - +0.4
31,328 - +1.1
31,401 + GFF256 0.11 -0.1
31,401 + GFF256 0.11 -0.4
31,403 + GFF256 0.12 -0.2
31,413 + GFF256 0.12 +0.1
31,509 - GFF256 0.20 +0.3
31,646 + GFF256 0.30 -0.6
31,646 + GFF256 0.30 +0.6
31,666 - GFF256 0.32 +0.3
31,741 - GFF256 0.38 -0.1
31,744 - GFF256 0.38 +0.6
31,744 - GFF256 0.38 +0.3
31,824 + GFF256 0.44 +1.2
31,845 - GFF256 0.46 +0.9

Or see this region's nucleotide sequence