Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1406

Experiment: LB_plus_SM_buffer with 6D2_phage 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1405 and GFF1406 are separated by 88 nucleotidesGFF1406 and GFF1407 are separated by 163 nucleotides GFF1405 - Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19), at 51,011 to 52,120 GFF1405 GFF1406 - Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein), at 52,209 to 53,567 GFF1406 GFF1407 - Maltose operon periplasmic protein MalM, at 53,731 to 54,648 GFF1407 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1at 51.250 kb on - strand, within GFF1405at 51.260 kb on + strand, within GFF1405at 51.261 kb on - strand, within GFF1405at 51.337 kb on - strand, within GFF1405at 51.397 kb on + strand, within GFF1405at 51.550 kb on + strand, within GFF1405at 51.550 kb on + strand, within GFF1405at 51.551 kb on - strand, within GFF1405at 51.674 kb on + strand, within GFF1405at 51.675 kb on - strand, within GFF1405at 51.844 kb on + strand, within GFF1405at 51.844 kb on + strand, within GFF1405at 51.845 kb on - strand, within GFF1405at 51.853 kb on - strand, within GFF1405at 51.933 kb on + strand, within GFF1405at 51.989 kb on + strand, within GFF1405at 51.989 kb on + strand, within GFF1405at 52.162 kb on + strandat 52.205 kb on + strandat 52.374 kb on - strand, within GFF1406at 52.374 kb on - strand, within GFF1406at 52.449 kb on - strand, within GFF1406at 52.459 kb on - strand, within GFF1406at 52.480 kb on - strand, within GFF1406at 52.602 kb on + strand, within GFF1406at 52.618 kb on + strand, within GFF1406at 52.619 kb on - strand, within GFF1406at 52.740 kb on + strand, within GFF1406at 52.760 kb on + strand, within GFF1406at 52.764 kb on + strand, within GFF1406at 52.804 kb on + strand, within GFF1406at 52.889 kb on + strand, within GFF1406at 52.890 kb on - strand, within GFF1406at 52.890 kb on - strand, within GFF1406at 52.890 kb on - strand, within GFF1406at 52.890 kb on - strand, within GFF1406at 52.890 kb on - strand, within GFF1406at 52.983 kb on + strand, within GFF1406at 52.983 kb on + strand, within GFF1406at 52.984 kb on - strand, within GFF1406at 53.013 kb on - strand, within GFF1406at 53.117 kb on + strand, within GFF1406at 53.118 kb on - strand, within GFF1406at 53.127 kb on - strand, within GFF1406at 53.160 kb on - strand, within GFF1406at 53.160 kb on - strand, within GFF1406at 53.175 kb on + strand, within GFF1406at 53.175 kb on + strand, within GFF1406at 53.183 kb on + strand, within GFF1406at 53.187 kb on + strand, within GFF1406at 53.187 kb on + strand, within GFF1406at 53.210 kb on + strand, within GFF1406at 53.210 kb on + strand, within GFF1406at 53.242 kb on + strand, within GFF1406at 53.342 kb on + strand, within GFF1406at 53.342 kb on + strand, within GFF1406at 53.405 kb on + strand, within GFF1406at 53.445 kb on + strandat 53.445 kb on + strandat 53.566 kb on - strandat 53.568 kb on + strandat 53.818 kb on + strandat 53.818 kb on + strandat 53.819 kb on - strandat 53.819 kb on - strandat 53.819 kb on - strandat 53.958 kb on + strand, within GFF1407at 53.977 kb on + strand, within GFF1407at 53.978 kb on - strand, within GFF1407at 54.217 kb on - strand, within GFF1407at 54.246 kb on + strand, within GFF1407at 54.246 kb on + strand, within GFF1407at 54.271 kb on + strand, within GFF1407at 54.289 kb on - strand, within GFF1407at 54.516 kb on + strand, within GFF1407

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 0.75 MOI
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51,250 - GFF1405 0.22 +0.7
51,260 + GFF1405 0.22 -0.0
51,261 - GFF1405 0.23 +0.3
51,337 - GFF1405 0.29 -0.0
51,397 + GFF1405 0.35 +0.1
51,550 + GFF1405 0.49 -0.4
51,550 + GFF1405 0.49 +0.3
51,551 - GFF1405 0.49 +0.2
51,674 + GFF1405 0.60 -0.6
51,675 - GFF1405 0.60 -0.1
51,844 + GFF1405 0.75 +0.0
51,844 + GFF1405 0.75 +0.4
51,845 - GFF1405 0.75 -0.1
51,853 - GFF1405 0.76 -0.7
51,933 + GFF1405 0.83 -0.3
51,989 + GFF1405 0.88 +0.2
51,989 + GFF1405 0.88 +0.3
52,162 + +0.3
52,205 + -0.1
52,374 - GFF1406 0.12 -0.5
52,374 - GFF1406 0.12 -0.1
52,449 - GFF1406 0.18 -0.0
52,459 - GFF1406 0.18 +0.2
52,480 - GFF1406 0.20 +0.5
52,602 + GFF1406 0.29 +0.1
52,618 + GFF1406 0.30 -0.5
52,619 - GFF1406 0.30 +0.1
52,740 + GFF1406 0.39 +0.2
52,760 + GFF1406 0.41 +0.3
52,764 + GFF1406 0.41 -0.4
52,804 + GFF1406 0.44 +0.4
52,889 + GFF1406 0.50 +0.1
52,890 - GFF1406 0.50 +0.3
52,890 - GFF1406 0.50 +0.1
52,890 - GFF1406 0.50 -0.1
52,890 - GFF1406 0.50 -0.9
52,890 - GFF1406 0.50 +0.0
52,983 + GFF1406 0.57 -0.0
52,983 + GFF1406 0.57 +0.2
52,984 - GFF1406 0.57 -1.6
53,013 - GFF1406 0.59 -2.0
53,117 + GFF1406 0.67 +0.4
53,118 - GFF1406 0.67 +0.1
53,127 - GFF1406 0.68 -0.6
53,160 - GFF1406 0.70 -0.0
53,160 - GFF1406 0.70 +0.6
53,175 + GFF1406 0.71 +0.4
53,175 + GFF1406 0.71 +0.2
53,183 + GFF1406 0.72 +0.5
53,187 + GFF1406 0.72 -1.3
53,187 + GFF1406 0.72 -1.3
53,210 + GFF1406 0.74 +0.6
53,210 + GFF1406 0.74 -0.7
53,242 + GFF1406 0.76 -0.5
53,342 + GFF1406 0.83 +0.0
53,342 + GFF1406 0.83 -0.6
53,405 + GFF1406 0.88 +0.4
53,445 + -0.3
53,445 + -0.0
53,566 - -0.4
53,568 + +0.2
53,818 + +0.0
53,818 + +0.1
53,819 - +1.1
53,819 - +0.4
53,819 - +0.5
53,958 + GFF1407 0.25 -0.2
53,977 + GFF1407 0.27 -0.0
53,978 - GFF1407 0.27 -1.4
54,217 - GFF1407 0.53 -0.8
54,246 + GFF1407 0.56 -0.4
54,246 + GFF1407 0.56 +0.2
54,271 + GFF1407 0.59 +0.9
54,289 - GFF1407 0.61 +0.4
54,516 + GFF1407 0.86 +0.2

Or see this region's nucleotide sequence