Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1011

Experiment: LB_plus_SM_buffer with 6D2_phage 0.75 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1009 and GFF1010 are separated by 112 nucleotidesGFF1010 and GFF1011 are separated by 61 nucleotidesGFF1011 and GFF1012 are separated by 101 nucleotidesGFF1012 and GFF1013 are separated by 14 nucleotides GFF1009 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 193,434 to 195,095 GFF1009 GFF1010 - FIG01048313: hypothetical protein, at 195,208 to 195,357 GFF1010 GFF1011 - Transcriptional regulatory protein levR, at 195,419 to 198,184 GFF1011 GFF1012 - PTS system, mannose-specific IIA component (EC 2.7.1.69), at 198,286 to 198,708 GFF1012 GFF1013 - PTS system, mannose-specific IIB component (EC 2.7.1.69), at 198,723 to 199,184 GFF1013 Position (kb) 195 196 197 198 199Strain fitness (log2 ratio) -2 -1 0 1at 194.584 kb on + strand, within GFF1009at 194.722 kb on + strand, within GFF1009at 194.723 kb on - strand, within GFF1009at 194.723 kb on - strand, within GFF1009at 195.121 kb on - strandat 195.210 kb on - strandat 195.246 kb on - strand, within GFF1010at 195.386 kb on + strandat 195.386 kb on + strandat 195.386 kb on + strandat 195.387 kb on - strandat 195.523 kb on + strandat 195.523 kb on + strandat 195.524 kb on - strandat 195.917 kb on - strand, within GFF1011at 195.917 kb on - strand, within GFF1011at 196.053 kb on + strand, within GFF1011at 196.053 kb on + strand, within GFF1011at 196.054 kb on - strand, within GFF1011at 196.180 kb on - strand, within GFF1011at 196.200 kb on + strand, within GFF1011at 196.201 kb on - strand, within GFF1011at 196.208 kb on - strand, within GFF1011at 196.382 kb on + strand, within GFF1011at 196.383 kb on - strand, within GFF1011at 196.428 kb on - strand, within GFF1011at 196.582 kb on + strand, within GFF1011at 196.630 kb on + strand, within GFF1011at 196.656 kb on - strand, within GFF1011at 196.656 kb on - strand, within GFF1011at 196.666 kb on - strand, within GFF1011at 196.695 kb on + strand, within GFF1011at 196.858 kb on + strand, within GFF1011at 196.863 kb on - strand, within GFF1011at 196.881 kb on + strand, within GFF1011at 196.882 kb on - strand, within GFF1011at 197.041 kb on + strand, within GFF1011at 197.042 kb on - strand, within GFF1011at 197.126 kb on + strand, within GFF1011at 197.144 kb on - strand, within GFF1011at 197.246 kb on + strand, within GFF1011at 197.474 kb on + strand, within GFF1011at 197.505 kb on + strand, within GFF1011at 197.647 kb on - strand, within GFF1011at 197.650 kb on + strand, within GFF1011at 197.754 kb on - strand, within GFF1011at 197.754 kb on - strand, within GFF1011at 197.963 kb on + strandat 197.964 kb on - strandat 197.964 kb on - strandat 197.964 kb on - strandat 197.971 kb on + strandat 197.971 kb on + strandat 197.971 kb on + strandat 197.975 kb on - strandat 197.975 kb on - strandat 198.092 kb on + strandat 198.093 kb on - strandat 198.093 kb on - strandat 198.137 kb on - strandat 198.359 kb on + strand, within GFF1012at 198.438 kb on - strand, within GFF1012at 198.615 kb on + strand, within GFF1012at 198.806 kb on + strand, within GFF1013at 198.833 kb on + strand, within GFF1013

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 0.75 MOI
remove
194,584 + GFF1009 0.69 -0.6
194,722 + GFF1009 0.77 +0.6
194,723 - GFF1009 0.78 -1.2
194,723 - GFF1009 0.78 +1.4
195,121 - -0.2
195,210 - +0.0
195,246 - GFF1010 0.25 -0.5
195,386 + -1.9
195,386 + -0.7
195,386 + +0.0
195,387 - -0.7
195,523 + -0.0
195,523 + -0.3
195,524 - +0.2
195,917 - GFF1011 0.18 -0.1
195,917 - GFF1011 0.18 -0.6
196,053 + GFF1011 0.23 +0.2
196,053 + GFF1011 0.23 -0.4
196,054 - GFF1011 0.23 -0.0
196,180 - GFF1011 0.28 -0.3
196,200 + GFF1011 0.28 +0.2
196,201 - GFF1011 0.28 +0.2
196,208 - GFF1011 0.29 -0.0
196,382 + GFF1011 0.35 -0.0
196,383 - GFF1011 0.35 +0.1
196,428 - GFF1011 0.36 -0.1
196,582 + GFF1011 0.42 +1.1
196,630 + GFF1011 0.44 -1.5
196,656 - GFF1011 0.45 -0.6
196,656 - GFF1011 0.45 +0.2
196,666 - GFF1011 0.45 +0.2
196,695 + GFF1011 0.46 +0.4
196,858 + GFF1011 0.52 -0.2
196,863 - GFF1011 0.52 -0.2
196,881 + GFF1011 0.53 +0.4
196,882 - GFF1011 0.53 -0.4
197,041 + GFF1011 0.59 +0.1
197,042 - GFF1011 0.59 -0.1
197,126 + GFF1011 0.62 -0.6
197,144 - GFF1011 0.62 -0.8
197,246 + GFF1011 0.66 +0.6
197,474 + GFF1011 0.74 -0.6
197,505 + GFF1011 0.75 +0.4
197,647 - GFF1011 0.81 -0.9
197,650 + GFF1011 0.81 +0.1
197,754 - GFF1011 0.84 -1.0
197,754 - GFF1011 0.84 -0.3
197,963 + +0.3
197,964 - -0.4
197,964 - +0.8
197,964 - +0.0
197,971 + +0.4
197,971 + -1.5
197,971 + -0.1
197,975 - -0.5
197,975 - +0.1
198,092 + -0.0
198,093 - -1.3
198,093 - -1.3
198,137 - +0.6
198,359 + GFF1012 0.17 +0.3
198,438 - GFF1012 0.36 -0.2
198,615 + GFF1012 0.78 +0.1
198,806 + GFF1013 0.18 -0.9
198,833 + GFF1013 0.24 -0.9

Or see this region's nucleotide sequence