Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3371

Experiment: Lactitol 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3369 and Echvi_3370 overlap by 8 nucleotidesEchvi_3370 and Echvi_3371 overlap by 32 nucleotidesEchvi_3371 and Echvi_3372 are separated by 183 nucleotidesEchvi_3372 and Echvi_3373 are separated by 308 nucleotides Echvi_3369: Echvi_3369 - Protein of unknown function (DUF2752)., at 3,976,834 to 3,977,139 _3369 Echvi_3370: Echvi_3370 - Predicted membrane protein, at 3,977,132 to 3,977,530 _3370 Echvi_3371: Echvi_3371 - hypothetical protein, at 3,977,499 to 3,978,470 _3371 Echvi_3372: Echvi_3372 - Predicted membrane protein, at 3,978,654 to 3,978,920 _3372 Echvi_3373: Echvi_3373 - Predicted aminopeptidases, at 3,979,229 to 3,980,719 _3373 Position (kb) 3977 3978 3979Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3976.575 kb on - strandat 3976.597 kb on + strandat 3976.597 kb on + strandat 3976.631 kb on - strandat 3976.631 kb on - strandat 3976.631 kb on - strandat 3976.631 kb on - strandat 3976.638 kb on + strandat 3976.639 kb on - strandat 3976.642 kb on - strandat 3976.642 kb on - strandat 3976.642 kb on - strandat 3976.685 kb on + strandat 3976.685 kb on + strandat 3976.685 kb on + strandat 3976.697 kb on - strandat 3976.853 kb on + strandat 3976.877 kb on + strand, within Echvi_3369at 3976.941 kb on + strand, within Echvi_3369at 3976.941 kb on + strand, within Echvi_3369at 3977.078 kb on + strand, within Echvi_3369at 3977.078 kb on + strand, within Echvi_3369at 3977.086 kb on + strand, within Echvi_3369at 3977.089 kb on - strand, within Echvi_3369at 3977.105 kb on + strand, within Echvi_3369at 3977.105 kb on + strand, within Echvi_3369at 3977.127 kb on + strandat 3977.131 kb on + strandat 3977.474 kb on + strand, within Echvi_3370at 3977.475 kb on - strand, within Echvi_3370at 3977.488 kb on + strand, within Echvi_3370at 3977.488 kb on + strand, within Echvi_3370at 3977.494 kb on + strandat 3977.495 kb on - strandat 3977.495 kb on - strandat 3977.495 kb on - strandat 3977.495 kb on - strandat 3977.516 kb on - strandat 3977.516 kb on - strandat 3977.528 kb on + strandat 3977.529 kb on - strandat 3977.601 kb on - strand, within Echvi_3371at 3977.601 kb on - strand, within Echvi_3371at 3977.641 kb on + strand, within Echvi_3371at 3977.642 kb on - strand, within Echvi_3371at 3977.677 kb on + strand, within Echvi_3371at 3977.678 kb on - strand, within Echvi_3371at 3977.682 kb on + strand, within Echvi_3371at 3977.717 kb on - strand, within Echvi_3371at 3977.724 kb on + strand, within Echvi_3371at 3977.724 kb on + strand, within Echvi_3371at 3977.725 kb on - strand, within Echvi_3371at 3977.738 kb on + strand, within Echvi_3371at 3977.835 kb on - strand, within Echvi_3371at 3977.853 kb on - strand, within Echvi_3371at 3977.883 kb on - strand, within Echvi_3371at 3977.883 kb on - strand, within Echvi_3371at 3977.883 kb on - strand, within Echvi_3371at 3978.002 kb on + strand, within Echvi_3371at 3978.018 kb on - strand, within Echvi_3371at 3978.082 kb on + strand, within Echvi_3371at 3978.120 kb on - strand, within Echvi_3371at 3978.146 kb on + strand, within Echvi_3371at 3978.146 kb on + strand, within Echvi_3371at 3978.146 kb on + strand, within Echvi_3371at 3978.147 kb on - strand, within Echvi_3371at 3978.147 kb on - strand, within Echvi_3371at 3978.270 kb on - strand, within Echvi_3371at 3978.330 kb on + strand, within Echvi_3371at 3978.336 kb on + strand, within Echvi_3371at 3978.392 kb on + strandat 3978.393 kb on - strandat 3978.408 kb on - strandat 3978.494 kb on + strandat 3978.496 kb on + strandat 3978.500 kb on + strandat 3978.553 kb on - strandat 3978.557 kb on + strandat 3978.557 kb on + strandat 3978.565 kb on - strandat 3978.586 kb on - strandat 3978.591 kb on + strandat 3978.592 kb on - strandat 3978.653 kb on + strandat 3978.653 kb on + strandat 3978.654 kb on - strandat 3978.654 kb on - strandat 3978.663 kb on - strandat 3978.663 kb on - strandat 3978.740 kb on + strand, within Echvi_3372at 3978.786 kb on + strand, within Echvi_3372at 3978.787 kb on - strand, within Echvi_3372at 3978.787 kb on - strand, within Echvi_3372at 3978.789 kb on - strand, within Echvi_3372at 3978.813 kb on - strand, within Echvi_3372at 3978.880 kb on - strand, within Echvi_3372at 3978.939 kb on - strandat 3978.943 kb on - strandat 3978.982 kb on + strandat 3978.982 kb on + strandat 3978.983 kb on - strandat 3978.983 kb on - strandat 3978.983 kb on - strandat 3978.983 kb on - strandat 3978.997 kb on + strandat 3979.042 kb on - strandat 3979.060 kb on - strandat 3979.093 kb on + strandat 3979.094 kb on - strandat 3979.094 kb on - strandat 3979.098 kb on + strandat 3979.098 kb on + strandat 3979.098 kb on + strandat 3979.111 kb on - strandat 3979.117 kb on + strandat 3979.118 kb on - strandat 3979.131 kb on + strandat 3979.144 kb on + strandat 3979.231 kb on - strandat 3979.231 kb on - strandat 3979.243 kb on - strandat 3979.243 kb on - strandat 3979.243 kb on - strandat 3979.333 kb on - strandat 3979.344 kb on + strandat 3979.351 kb on + strandat 3979.351 kb on + strandat 3979.351 kb on + strandat 3979.356 kb on + strandat 3979.356 kb on + strandat 3979.357 kb on - strandat 3979.372 kb on + strandat 3979.373 kb on - strandat 3979.401 kb on + strand, within Echvi_3373at 3979.402 kb on - strand, within Echvi_3373

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol 10mM (C)
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3,976,575 - -0.5
3,976,597 + -0.2
3,976,597 + -0.2
3,976,631 - -1.4
3,976,631 - -0.4
3,976,631 - +1.0
3,976,631 - +0.6
3,976,638 + -0.4
3,976,639 - -0.3
3,976,642 - -0.7
3,976,642 - +1.5
3,976,642 - +0.1
3,976,685 + -0.4
3,976,685 + -0.2
3,976,685 + +0.4
3,976,697 - -0.9
3,976,853 + +1.0
3,976,877 + Echvi_3369 0.14 -0.0
3,976,941 + Echvi_3369 0.35 +0.2
3,976,941 + Echvi_3369 0.35 +1.0
3,977,078 + Echvi_3369 0.80 -1.2
3,977,078 + Echvi_3369 0.80 +0.0
3,977,086 + Echvi_3369 0.82 -1.0
3,977,089 - Echvi_3369 0.83 +2.3
3,977,105 + Echvi_3369 0.89 -2.0
3,977,105 + Echvi_3369 0.89 -0.9
3,977,127 + +2.0
3,977,131 + -1.7
3,977,474 + Echvi_3370 0.86 -0.4
3,977,475 - Echvi_3370 0.86 +1.5
3,977,488 + Echvi_3370 0.89 -0.1
3,977,488 + Echvi_3370 0.89 +0.1
3,977,494 + +0.8
3,977,495 - -1.5
3,977,495 - +0.8
3,977,495 - -1.0
3,977,495 - -0.0
3,977,516 - +0.2
3,977,516 - +1.0
3,977,528 + -0.2
3,977,529 - +0.2
3,977,601 - Echvi_3371 0.10 +1.0
3,977,601 - Echvi_3371 0.10 -1.3
3,977,641 + Echvi_3371 0.15 -1.5
3,977,642 - Echvi_3371 0.15 -0.9
3,977,677 + Echvi_3371 0.18 +0.9
3,977,678 - Echvi_3371 0.18 -0.5
3,977,682 + Echvi_3371 0.19 +3.3
3,977,717 - Echvi_3371 0.22 -0.3
3,977,724 + Echvi_3371 0.23 -2.3
3,977,724 + Echvi_3371 0.23 -0.6
3,977,725 - Echvi_3371 0.23 +0.2
3,977,738 + Echvi_3371 0.25 -0.6
3,977,835 - Echvi_3371 0.35 -1.7
3,977,853 - Echvi_3371 0.36 +0.4
3,977,883 - Echvi_3371 0.40 -0.2
3,977,883 - Echvi_3371 0.40 -1.2
3,977,883 - Echvi_3371 0.40 -0.4
3,978,002 + Echvi_3371 0.52 +0.2
3,978,018 - Echvi_3371 0.53 -1.3
3,978,082 + Echvi_3371 0.60 -2.5
3,978,120 - Echvi_3371 0.64 -0.8
3,978,146 + Echvi_3371 0.67 +0.3
3,978,146 + Echvi_3371 0.67 +1.4
3,978,146 + Echvi_3371 0.67 +0.8
3,978,147 - Echvi_3371 0.67 -0.4
3,978,147 - Echvi_3371 0.67 -0.0
3,978,270 - Echvi_3371 0.79 -0.1
3,978,330 + Echvi_3371 0.85 -1.5
3,978,336 + Echvi_3371 0.86 +0.2
3,978,392 + -1.1
3,978,393 - +0.3
3,978,408 - -0.0
3,978,494 + +0.4
3,978,496 + -0.4
3,978,500 + -0.4
3,978,553 - -0.0
3,978,557 + -0.6
3,978,557 + +0.3
3,978,565 - +0.7
3,978,586 - -0.5
3,978,591 + +0.2
3,978,592 - -0.4
3,978,653 + +0.3
3,978,653 + +1.4
3,978,654 - -1.0
3,978,654 - +1.4
3,978,663 - -0.6
3,978,663 - -1.3
3,978,740 + Echvi_3372 0.32 +0.7
3,978,786 + Echvi_3372 0.49 -1.6
3,978,787 - Echvi_3372 0.50 -0.7
3,978,787 - Echvi_3372 0.50 -0.4
3,978,789 - Echvi_3372 0.51 -0.7
3,978,813 - Echvi_3372 0.60 -0.1
3,978,880 - Echvi_3372 0.85 +0.2
3,978,939 - +1.0
3,978,943 - -0.7
3,978,982 + -0.6
3,978,982 + -1.0
3,978,983 - -1.3
3,978,983 - +0.0
3,978,983 - -0.8
3,978,983 - +0.4
3,978,997 + -1.0
3,979,042 - -0.3
3,979,060 - +1.8
3,979,093 + -0.1
3,979,094 - +0.5
3,979,094 - -1.0
3,979,098 + +1.2
3,979,098 + -0.4
3,979,098 + -1.6
3,979,111 - -0.2
3,979,117 + -0.9
3,979,118 - +1.0
3,979,131 + +0.8
3,979,144 + -0.8
3,979,231 - -0.2
3,979,231 - +1.2
3,979,243 - -0.3
3,979,243 - +0.2
3,979,243 - -0.2
3,979,333 - -1.3
3,979,344 + -2.0
3,979,351 + -0.3
3,979,351 + -0.2
3,979,351 + +0.1
3,979,356 + -0.9
3,979,356 + -0.0
3,979,357 - -0.2
3,979,372 + -0.5
3,979,373 - -0.0
3,979,401 + Echvi_3373 0.12 -0.6
3,979,402 - Echvi_3373 0.12 -0.3

Or see this region's nucleotide sequence