Experiment: Lactitol 10mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3369 and Echvi_3370 overlap by 8 nucleotides Echvi_3370 and Echvi_3371 overlap by 32 nucleotides Echvi_3371 and Echvi_3372 are separated by 183 nucleotides Echvi_3372 and Echvi_3373 are separated by 308 nucleotides
Echvi_3369: Echvi_3369 - Protein of unknown function (DUF2752)., at 3,976,834 to 3,977,139
_3369
Echvi_3370: Echvi_3370 - Predicted membrane protein, at 3,977,132 to 3,977,530
_3370
Echvi_3371: Echvi_3371 - hypothetical protein, at 3,977,499 to 3,978,470
_3371
Echvi_3372: Echvi_3372 - Predicted membrane protein, at 3,978,654 to 3,978,920
_3372
Echvi_3373: Echvi_3373 - Predicted aminopeptidases, at 3,979,229 to 3,980,719
_3373
Position (kb)
3977
3978
3979 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3976.575 kb on - strand at 3976.597 kb on + strand at 3976.597 kb on + strand at 3976.631 kb on - strand at 3976.631 kb on - strand at 3976.631 kb on - strand at 3976.631 kb on - strand at 3976.638 kb on + strand at 3976.639 kb on - strand at 3976.642 kb on - strand at 3976.642 kb on - strand at 3976.642 kb on - strand at 3976.685 kb on + strand at 3976.685 kb on + strand at 3976.685 kb on + strand at 3976.697 kb on - strand at 3976.853 kb on + strand at 3976.877 kb on + strand, within Echvi_3369 at 3976.941 kb on + strand, within Echvi_3369 at 3976.941 kb on + strand, within Echvi_3369 at 3977.078 kb on + strand, within Echvi_3369 at 3977.078 kb on + strand, within Echvi_3369 at 3977.086 kb on + strand, within Echvi_3369 at 3977.089 kb on - strand, within Echvi_3369 at 3977.105 kb on + strand, within Echvi_3369 at 3977.105 kb on + strand, within Echvi_3369 at 3977.127 kb on + strand at 3977.131 kb on + strand at 3977.474 kb on + strand, within Echvi_3370 at 3977.475 kb on - strand, within Echvi_3370 at 3977.488 kb on + strand, within Echvi_3370 at 3977.488 kb on + strand, within Echvi_3370 at 3977.494 kb on + strand at 3977.495 kb on - strand at 3977.495 kb on - strand at 3977.495 kb on - strand at 3977.495 kb on - strand at 3977.516 kb on - strand at 3977.516 kb on - strand at 3977.528 kb on + strand at 3977.529 kb on - strand at 3977.601 kb on - strand, within Echvi_3371 at 3977.601 kb on - strand, within Echvi_3371 at 3977.641 kb on + strand, within Echvi_3371 at 3977.642 kb on - strand, within Echvi_3371 at 3977.677 kb on + strand, within Echvi_3371 at 3977.678 kb on - strand, within Echvi_3371 at 3977.682 kb on + strand, within Echvi_3371 at 3977.717 kb on - strand, within Echvi_3371 at 3977.724 kb on + strand, within Echvi_3371 at 3977.724 kb on + strand, within Echvi_3371 at 3977.725 kb on - strand, within Echvi_3371 at 3977.738 kb on + strand, within Echvi_3371 at 3977.835 kb on - strand, within Echvi_3371 at 3977.853 kb on - strand, within Echvi_3371 at 3977.883 kb on - strand, within Echvi_3371 at 3977.883 kb on - strand, within Echvi_3371 at 3977.883 kb on - strand, within Echvi_3371 at 3978.002 kb on + strand, within Echvi_3371 at 3978.018 kb on - strand, within Echvi_3371 at 3978.082 kb on + strand, within Echvi_3371 at 3978.120 kb on - strand, within Echvi_3371 at 3978.146 kb on + strand, within Echvi_3371 at 3978.146 kb on + strand, within Echvi_3371 at 3978.146 kb on + strand, within Echvi_3371 at 3978.147 kb on - strand, within Echvi_3371 at 3978.147 kb on - strand, within Echvi_3371 at 3978.270 kb on - strand, within Echvi_3371 at 3978.330 kb on + strand, within Echvi_3371 at 3978.336 kb on + strand, within Echvi_3371 at 3978.392 kb on + strand at 3978.393 kb on - strand at 3978.408 kb on - strand at 3978.494 kb on + strand at 3978.496 kb on + strand at 3978.500 kb on + strand at 3978.553 kb on - strand at 3978.557 kb on + strand at 3978.557 kb on + strand at 3978.565 kb on - strand at 3978.586 kb on - strand at 3978.591 kb on + strand at 3978.592 kb on - strand at 3978.653 kb on + strand at 3978.653 kb on + strand at 3978.654 kb on - strand at 3978.654 kb on - strand at 3978.663 kb on - strand at 3978.663 kb on - strand at 3978.740 kb on + strand, within Echvi_3372 at 3978.786 kb on + strand, within Echvi_3372 at 3978.787 kb on - strand, within Echvi_3372 at 3978.787 kb on - strand, within Echvi_3372 at 3978.789 kb on - strand, within Echvi_3372 at 3978.813 kb on - strand, within Echvi_3372 at 3978.880 kb on - strand, within Echvi_3372 at 3978.939 kb on - strand at 3978.943 kb on - strand at 3978.982 kb on + strand at 3978.982 kb on + strand at 3978.983 kb on - strand at 3978.983 kb on - strand at 3978.983 kb on - strand at 3978.983 kb on - strand at 3978.997 kb on + strand at 3979.042 kb on - strand at 3979.060 kb on - strand at 3979.093 kb on + strand at 3979.094 kb on - strand at 3979.094 kb on - strand at 3979.098 kb on + strand at 3979.098 kb on + strand at 3979.098 kb on + strand at 3979.111 kb on - strand at 3979.117 kb on + strand at 3979.118 kb on - strand at 3979.131 kb on + strand at 3979.144 kb on + strand at 3979.231 kb on - strand at 3979.231 kb on - strand at 3979.243 kb on - strand at 3979.243 kb on - strand at 3979.243 kb on - strand at 3979.333 kb on - strand at 3979.344 kb on + strand at 3979.351 kb on + strand at 3979.351 kb on + strand at 3979.351 kb on + strand at 3979.356 kb on + strand at 3979.356 kb on + strand at 3979.357 kb on - strand at 3979.372 kb on + strand at 3979.373 kb on - strand at 3979.401 kb on + strand, within Echvi_3373 at 3979.402 kb on - strand, within Echvi_3373
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol 10mM (C) remove 3,976,575 - -0.5 3,976,597 + -0.2 3,976,597 + -0.2 3,976,631 - -1.4 3,976,631 - -0.4 3,976,631 - +1.0 3,976,631 - +0.6 3,976,638 + -0.4 3,976,639 - -0.3 3,976,642 - -0.7 3,976,642 - +1.5 3,976,642 - +0.1 3,976,685 + -0.4 3,976,685 + -0.2 3,976,685 + +0.4 3,976,697 - -0.9 3,976,853 + +1.0 3,976,877 + Echvi_3369 0.14 -0.0 3,976,941 + Echvi_3369 0.35 +0.2 3,976,941 + Echvi_3369 0.35 +1.0 3,977,078 + Echvi_3369 0.80 -1.2 3,977,078 + Echvi_3369 0.80 +0.0 3,977,086 + Echvi_3369 0.82 -1.0 3,977,089 - Echvi_3369 0.83 +2.3 3,977,105 + Echvi_3369 0.89 -2.0 3,977,105 + Echvi_3369 0.89 -0.9 3,977,127 + +2.0 3,977,131 + -1.7 3,977,474 + Echvi_3370 0.86 -0.4 3,977,475 - Echvi_3370 0.86 +1.5 3,977,488 + Echvi_3370 0.89 -0.1 3,977,488 + Echvi_3370 0.89 +0.1 3,977,494 + +0.8 3,977,495 - -1.5 3,977,495 - +0.8 3,977,495 - -1.0 3,977,495 - -0.0 3,977,516 - +0.2 3,977,516 - +1.0 3,977,528 + -0.2 3,977,529 - +0.2 3,977,601 - Echvi_3371 0.10 +1.0 3,977,601 - Echvi_3371 0.10 -1.3 3,977,641 + Echvi_3371 0.15 -1.5 3,977,642 - Echvi_3371 0.15 -0.9 3,977,677 + Echvi_3371 0.18 +0.9 3,977,678 - Echvi_3371 0.18 -0.5 3,977,682 + Echvi_3371 0.19 +3.3 3,977,717 - Echvi_3371 0.22 -0.3 3,977,724 + Echvi_3371 0.23 -2.3 3,977,724 + Echvi_3371 0.23 -0.6 3,977,725 - Echvi_3371 0.23 +0.2 3,977,738 + Echvi_3371 0.25 -0.6 3,977,835 - Echvi_3371 0.35 -1.7 3,977,853 - Echvi_3371 0.36 +0.4 3,977,883 - Echvi_3371 0.40 -0.2 3,977,883 - Echvi_3371 0.40 -1.2 3,977,883 - Echvi_3371 0.40 -0.4 3,978,002 + Echvi_3371 0.52 +0.2 3,978,018 - Echvi_3371 0.53 -1.3 3,978,082 + Echvi_3371 0.60 -2.5 3,978,120 - Echvi_3371 0.64 -0.8 3,978,146 + Echvi_3371 0.67 +0.3 3,978,146 + Echvi_3371 0.67 +1.4 3,978,146 + Echvi_3371 0.67 +0.8 3,978,147 - Echvi_3371 0.67 -0.4 3,978,147 - Echvi_3371 0.67 -0.0 3,978,270 - Echvi_3371 0.79 -0.1 3,978,330 + Echvi_3371 0.85 -1.5 3,978,336 + Echvi_3371 0.86 +0.2 3,978,392 + -1.1 3,978,393 - +0.3 3,978,408 - -0.0 3,978,494 + +0.4 3,978,496 + -0.4 3,978,500 + -0.4 3,978,553 - -0.0 3,978,557 + -0.6 3,978,557 + +0.3 3,978,565 - +0.7 3,978,586 - -0.5 3,978,591 + +0.2 3,978,592 - -0.4 3,978,653 + +0.3 3,978,653 + +1.4 3,978,654 - -1.0 3,978,654 - +1.4 3,978,663 - -0.6 3,978,663 - -1.3 3,978,740 + Echvi_3372 0.32 +0.7 3,978,786 + Echvi_3372 0.49 -1.6 3,978,787 - Echvi_3372 0.50 -0.7 3,978,787 - Echvi_3372 0.50 -0.4 3,978,789 - Echvi_3372 0.51 -0.7 3,978,813 - Echvi_3372 0.60 -0.1 3,978,880 - Echvi_3372 0.85 +0.2 3,978,939 - +1.0 3,978,943 - -0.7 3,978,982 + -0.6 3,978,982 + -1.0 3,978,983 - -1.3 3,978,983 - +0.0 3,978,983 - -0.8 3,978,983 - +0.4 3,978,997 + -1.0 3,979,042 - -0.3 3,979,060 - +1.8 3,979,093 + -0.1 3,979,094 - +0.5 3,979,094 - -1.0 3,979,098 + +1.2 3,979,098 + -0.4 3,979,098 + -1.6 3,979,111 - -0.2 3,979,117 + -0.9 3,979,118 - +1.0 3,979,131 + +0.8 3,979,144 + -0.8 3,979,231 - -0.2 3,979,231 - +1.2 3,979,243 - -0.3 3,979,243 - +0.2 3,979,243 - -0.2 3,979,333 - -1.3 3,979,344 + -2.0 3,979,351 + -0.3 3,979,351 + -0.2 3,979,351 + +0.1 3,979,356 + -0.9 3,979,356 + -0.0 3,979,357 - -0.2 3,979,372 + -0.5 3,979,373 - -0.0 3,979,401 + Echvi_3373 0.12 -0.6 3,979,402 - Echvi_3373 0.12 -0.3
Or see this region's nucleotide sequence