Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0280

Experiment: Lactitol 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0280 and Echvi_0281 are separated by 19 nucleotides Echvi_0280: Echvi_0280 - TonB-linked outer membrane protein, SusC/RagA family, at 286,070 to 289,246 _0280 Echvi_0281: Echvi_0281 - SusD family., at 289,266 to 291,128 _0281 Position (kb) 286 287 288 289 290Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 285.178 kb on + strandat 285.178 kb on + strandat 285.281 kb on + strandat 285.281 kb on + strandat 285.281 kb on + strandat 285.281 kb on + strandat 285.366 kb on + strandat 285.368 kb on + strandat 285.368 kb on + strandat 285.368 kb on + strandat 285.440 kb on + strandat 285.440 kb on + strandat 285.440 kb on + strandat 285.441 kb on - strandat 285.451 kb on - strandat 285.507 kb on + strandat 285.523 kb on - strandat 285.525 kb on - strandat 285.551 kb on + strandat 285.551 kb on + strandat 285.551 kb on + strandat 285.564 kb on + strandat 285.565 kb on - strandat 285.664 kb on + strandat 285.686 kb on + strandat 285.687 kb on - strandat 285.688 kb on + strandat 285.757 kb on + strandat 285.805 kb on - strandat 285.866 kb on + strandat 285.866 kb on + strandat 285.890 kb on + strandat 286.009 kb on + strandat 286.034 kb on + strandat 286.056 kb on + strandat 286.056 kb on + strandat 286.102 kb on + strandat 286.107 kb on + strandat 286.140 kb on + strandat 286.140 kb on + strandat 286.140 kb on + strandat 286.145 kb on + strandat 286.224 kb on + strandat 286.224 kb on + strandat 286.224 kb on + strandat 286.225 kb on - strandat 286.338 kb on + strandat 286.407 kb on + strand, within Echvi_0280at 286.408 kb on - strand, within Echvi_0280at 286.410 kb on + strand, within Echvi_0280at 286.411 kb on - strand, within Echvi_0280at 286.411 kb on - strand, within Echvi_0280at 286.411 kb on - strand, within Echvi_0280at 286.411 kb on - strand, within Echvi_0280at 286.414 kb on - strand, within Echvi_0280at 286.414 kb on - strand, within Echvi_0280at 286.455 kb on + strand, within Echvi_0280at 286.569 kb on - strand, within Echvi_0280at 286.601 kb on - strand, within Echvi_0280at 286.642 kb on + strand, within Echvi_0280at 286.696 kb on + strand, within Echvi_0280at 286.730 kb on + strand, within Echvi_0280at 286.730 kb on + strand, within Echvi_0280at 286.731 kb on - strand, within Echvi_0280at 286.834 kb on + strand, within Echvi_0280at 286.834 kb on + strand, within Echvi_0280at 286.835 kb on - strand, within Echvi_0280at 286.869 kb on - strand, within Echvi_0280at 286.869 kb on - strand, within Echvi_0280at 286.882 kb on - strand, within Echvi_0280at 286.957 kb on - strand, within Echvi_0280at 286.958 kb on + strand, within Echvi_0280at 286.959 kb on - strand, within Echvi_0280at 286.960 kb on + strand, within Echvi_0280at 286.961 kb on - strand, within Echvi_0280at 286.961 kb on - strand, within Echvi_0280at 286.996 kb on + strand, within Echvi_0280at 286.997 kb on - strand, within Echvi_0280at 287.104 kb on + strand, within Echvi_0280at 287.104 kb on + strand, within Echvi_0280at 287.141 kb on + strand, within Echvi_0280at 287.141 kb on + strand, within Echvi_0280at 287.142 kb on - strand, within Echvi_0280at 287.177 kb on + strand, within Echvi_0280at 287.177 kb on + strand, within Echvi_0280at 287.178 kb on - strand, within Echvi_0280at 287.210 kb on + strand, within Echvi_0280at 287.210 kb on + strand, within Echvi_0280at 287.211 kb on - strand, within Echvi_0280at 287.211 kb on - strand, within Echvi_0280at 287.394 kb on + strand, within Echvi_0280at 287.394 kb on + strand, within Echvi_0280at 287.394 kb on + strand, within Echvi_0280at 287.394 kb on + strand, within Echvi_0280at 287.462 kb on + strand, within Echvi_0280at 287.505 kb on + strand, within Echvi_0280at 287.505 kb on + strand, within Echvi_0280at 287.560 kb on + strand, within Echvi_0280at 287.750 kb on - strand, within Echvi_0280at 287.759 kb on - strand, within Echvi_0280at 287.819 kb on + strand, within Echvi_0280at 287.819 kb on + strand, within Echvi_0280at 287.819 kb on + strand, within Echvi_0280at 287.820 kb on - strand, within Echvi_0280at 287.820 kb on - strand, within Echvi_0280at 287.822 kb on + strand, within Echvi_0280at 287.822 kb on + strand, within Echvi_0280at 287.822 kb on + strand, within Echvi_0280at 287.891 kb on + strand, within Echvi_0280at 287.891 kb on + strand, within Echvi_0280at 287.891 kb on + strand, within Echvi_0280at 287.913 kb on - strand, within Echvi_0280at 287.932 kb on + strand, within Echvi_0280at 287.936 kb on + strand, within Echvi_0280at 287.972 kb on + strand, within Echvi_0280at 287.972 kb on + strand, within Echvi_0280at 287.972 kb on + strand, within Echvi_0280at 287.972 kb on + strand, within Echvi_0280at 287.973 kb on - strand, within Echvi_0280at 287.973 kb on - strand, within Echvi_0280at 287.984 kb on + strand, within Echvi_0280at 287.984 kb on + strand, within Echvi_0280at 288.064 kb on + strand, within Echvi_0280at 288.064 kb on + strand, within Echvi_0280at 288.106 kb on + strand, within Echvi_0280at 288.107 kb on - strand, within Echvi_0280at 288.150 kb on + strand, within Echvi_0280at 288.150 kb on + strand, within Echvi_0280at 288.154 kb on - strand, within Echvi_0280at 288.154 kb on - strand, within Echvi_0280at 288.162 kb on - strand, within Echvi_0280at 288.162 kb on - strand, within Echvi_0280at 288.180 kb on - strand, within Echvi_0280at 288.180 kb on - strand, within Echvi_0280at 288.191 kb on - strand, within Echvi_0280at 288.191 kb on - strand, within Echvi_0280at 288.191 kb on - strand, within Echvi_0280at 288.191 kb on - strand, within Echvi_0280at 288.194 kb on + strand, within Echvi_0280at 288.248 kb on - strand, within Echvi_0280at 288.307 kb on - strand, within Echvi_0280at 288.341 kb on + strand, within Echvi_0280at 288.494 kb on + strand, within Echvi_0280at 288.495 kb on - strand, within Echvi_0280at 288.495 kb on - strand, within Echvi_0280at 288.495 kb on - strand, within Echvi_0280at 288.495 kb on - strand, within Echvi_0280at 288.496 kb on + strand, within Echvi_0280at 288.508 kb on - strand, within Echvi_0280at 288.518 kb on + strand, within Echvi_0280at 288.618 kb on - strand, within Echvi_0280at 288.710 kb on + strand, within Echvi_0280at 288.711 kb on - strand, within Echvi_0280at 288.844 kb on - strand, within Echvi_0280at 288.844 kb on - strand, within Echvi_0280at 288.869 kb on + strand, within Echvi_0280at 288.989 kb on + strandat 288.989 kb on + strandat 288.990 kb on - strandat 289.010 kb on + strandat 289.031 kb on + strandat 289.032 kb on - strandat 289.161 kb on + strandat 289.162 kb on - strandat 289.215 kb on + strandat 289.215 kb on + strandat 289.216 kb on - strandat 289.231 kb on - strandat 289.244 kb on + strandat 289.251 kb on + strandat 289.284 kb on - strandat 289.290 kb on + strandat 289.290 kb on + strandat 289.291 kb on - strandat 289.322 kb on - strandat 289.334 kb on + strandat 289.335 kb on - strandat 289.387 kb on + strandat 289.387 kb on + strandat 289.388 kb on - strandat 289.388 kb on - strandat 289.388 kb on - strandat 289.388 kb on - strandat 289.432 kb on - strandat 289.526 kb on + strand, within Echvi_0281at 289.526 kb on + strand, within Echvi_0281at 289.530 kb on - strand, within Echvi_0281at 289.592 kb on + strand, within Echvi_0281at 289.593 kb on - strand, within Echvi_0281at 289.593 kb on - strand, within Echvi_0281at 289.593 kb on - strand, within Echvi_0281at 289.593 kb on - strand, within Echvi_0281at 289.593 kb on - strand, within Echvi_0281at 289.593 kb on - strand, within Echvi_0281at 289.596 kb on + strand, within Echvi_0281at 289.596 kb on + strand, within Echvi_0281at 289.597 kb on - strand, within Echvi_0281at 289.597 kb on - strand, within Echvi_0281at 289.597 kb on - strand, within Echvi_0281at 289.597 kb on - strand, within Echvi_0281at 289.597 kb on - strand, within Echvi_0281at 289.597 kb on - strand, within Echvi_0281at 289.602 kb on + strand, within Echvi_0281at 289.602 kb on + strand, within Echvi_0281at 289.602 kb on + strand, within Echvi_0281at 289.602 kb on + strand, within Echvi_0281at 289.603 kb on - strand, within Echvi_0281at 289.603 kb on - strand, within Echvi_0281at 289.617 kb on - strand, within Echvi_0281at 289.637 kb on - strand, within Echvi_0281at 289.637 kb on - strand, within Echvi_0281at 289.697 kb on + strand, within Echvi_0281at 289.710 kb on + strand, within Echvi_0281at 289.731 kb on + strand, within Echvi_0281at 289.734 kb on + strand, within Echvi_0281at 289.764 kb on + strand, within Echvi_0281at 289.785 kb on + strand, within Echvi_0281at 289.832 kb on - strand, within Echvi_0281at 289.832 kb on - strand, within Echvi_0281at 289.895 kb on + strand, within Echvi_0281at 289.927 kb on + strand, within Echvi_0281at 289.935 kb on + strand, within Echvi_0281at 290.022 kb on + strand, within Echvi_0281at 290.113 kb on + strand, within Echvi_0281at 290.113 kb on + strand, within Echvi_0281at 290.151 kb on + strand, within Echvi_0281

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol 10mM (C)
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285,178 + +1.2
285,178 + +0.4
285,281 + +0.1
285,281 + +0.0
285,281 + +0.1
285,281 + -0.4
285,366 + -1.0
285,368 + +0.2
285,368 + -0.6
285,368 + +1.2
285,440 + +0.9
285,440 + +1.4
285,440 + -0.6
285,441 - +0.6
285,451 - -1.8
285,507 + -0.2
285,523 - -0.2
285,525 - +0.1
285,551 + +0.0
285,551 + +1.1
285,551 + +0.2
285,564 + +0.7
285,565 - +0.4
285,664 + +0.4
285,686 + -0.1
285,687 - +2.2
285,688 + +1.6
285,757 + +0.4
285,805 - -1.1
285,866 + +0.7
285,866 + +0.7
285,890 + +0.7
286,009 + +0.7
286,034 + +0.6
286,056 + -0.0
286,056 + +0.4
286,102 + +0.1
286,107 + +1.2
286,140 + -1.7
286,140 + -1.4
286,140 + -0.4
286,145 + -1.7
286,224 + +0.4
286,224 + -1.1
286,224 + -0.8
286,225 - -2.5
286,338 + -1.7
286,407 + Echvi_0280 0.11 -1.2
286,408 - Echvi_0280 0.11 -1.0
286,410 + Echvi_0280 0.11 -0.9
286,411 - Echvi_0280 0.11 -0.2
286,411 - Echvi_0280 0.11 -0.2
286,411 - Echvi_0280 0.11 -3.9
286,411 - Echvi_0280 0.11 +0.2
286,414 - Echvi_0280 0.11 -3.2
286,414 - Echvi_0280 0.11 -0.0
286,455 + Echvi_0280 0.12 -0.7
286,569 - Echvi_0280 0.16 -0.8
286,601 - Echvi_0280 0.17 -1.3
286,642 + Echvi_0280 0.18 -0.6
286,696 + Echvi_0280 0.20 -1.5
286,730 + Echvi_0280 0.21 -0.5
286,730 + Echvi_0280 0.21 -1.8
286,731 - Echvi_0280 0.21 -0.7
286,834 + Echvi_0280 0.24 -0.6
286,834 + Echvi_0280 0.24 -4.1
286,835 - Echvi_0280 0.24 -1.3
286,869 - Echvi_0280 0.25 -1.3
286,869 - Echvi_0280 0.25 -3.8
286,882 - Echvi_0280 0.26 -1.2
286,957 - Echvi_0280 0.28 -0.7
286,958 + Echvi_0280 0.28 -0.3
286,959 - Echvi_0280 0.28 -0.5
286,960 + Echvi_0280 0.28 -0.9
286,961 - Echvi_0280 0.28 -0.6
286,961 - Echvi_0280 0.28 -2.8
286,996 + Echvi_0280 0.29 -3.1
286,997 - Echvi_0280 0.29 -0.5
287,104 + Echvi_0280 0.33 -0.9
287,104 + Echvi_0280 0.33 -0.8
287,141 + Echvi_0280 0.34 +3.5
287,141 + Echvi_0280 0.34 -1.3
287,142 - Echvi_0280 0.34 -0.7
287,177 + Echvi_0280 0.35 -1.5
287,177 + Echvi_0280 0.35 -1.5
287,178 - Echvi_0280 0.35 -1.3
287,210 + Echvi_0280 0.36 -1.8
287,210 + Echvi_0280 0.36 -2.2
287,211 - Echvi_0280 0.36 +2.7
287,211 - Echvi_0280 0.36 -0.9
287,394 + Echvi_0280 0.42 -1.6
287,394 + Echvi_0280 0.42 -0.6
287,394 + Echvi_0280 0.42 -4.1
287,394 + Echvi_0280 0.42 -1.0
287,462 + Echvi_0280 0.44 +1.2
287,505 + Echvi_0280 0.45 -2.6
287,505 + Echvi_0280 0.45 -1.5
287,560 + Echvi_0280 0.47 -3.3
287,750 - Echvi_0280 0.53 -1.6
287,759 - Echvi_0280 0.53 -0.6
287,819 + Echvi_0280 0.55 -1.0
287,819 + Echvi_0280 0.55 -0.8
287,819 + Echvi_0280 0.55 -1.4
287,820 - Echvi_0280 0.55 +0.6
287,820 - Echvi_0280 0.55 -0.8
287,822 + Echvi_0280 0.55 -1.2
287,822 + Echvi_0280 0.55 -0.8
287,822 + Echvi_0280 0.55 -2.6
287,891 + Echvi_0280 0.57 -1.9
287,891 + Echvi_0280 0.57 -0.0
287,891 + Echvi_0280 0.57 -1.6
287,913 - Echvi_0280 0.58 -0.3
287,932 + Echvi_0280 0.59 -0.8
287,936 + Echvi_0280 0.59 -2.0
287,972 + Echvi_0280 0.60 +0.6
287,972 + Echvi_0280 0.60 -2.0
287,972 + Echvi_0280 0.60 +0.0
287,972 + Echvi_0280 0.60 -1.8
287,973 - Echvi_0280 0.60 -2.3
287,973 - Echvi_0280 0.60 -0.1
287,984 + Echvi_0280 0.60 -0.1
287,984 + Echvi_0280 0.60 +0.2
288,064 + Echvi_0280 0.63 -0.6
288,064 + Echvi_0280 0.63 -1.5
288,106 + Echvi_0280 0.64 -1.2
288,107 - Echvi_0280 0.64 -0.2
288,150 + Echvi_0280 0.65 +0.4
288,150 + Echvi_0280 0.65 -1.1
288,154 - Echvi_0280 0.66 -0.7
288,154 - Echvi_0280 0.66 -1.7
288,162 - Echvi_0280 0.66 -0.3
288,162 - Echvi_0280 0.66 -0.3
288,180 - Echvi_0280 0.66 -0.8
288,180 - Echvi_0280 0.66 -1.0
288,191 - Echvi_0280 0.67 -2.3
288,191 - Echvi_0280 0.67 -1.6
288,191 - Echvi_0280 0.67 +0.5
288,191 - Echvi_0280 0.67 -2.4
288,194 + Echvi_0280 0.67 -1.3
288,248 - Echvi_0280 0.69 -0.7
288,307 - Echvi_0280 0.70 -2.5
288,341 + Echvi_0280 0.71 -0.4
288,494 + Echvi_0280 0.76 -1.4
288,495 - Echvi_0280 0.76 -0.9
288,495 - Echvi_0280 0.76 +1.2
288,495 - Echvi_0280 0.76 -2.7
288,495 - Echvi_0280 0.76 -1.1
288,496 + Echvi_0280 0.76 -1.2
288,508 - Echvi_0280 0.77 -3.1
288,518 + Echvi_0280 0.77 -1.7
288,618 - Echvi_0280 0.80 -1.6
288,710 + Echvi_0280 0.83 -1.7
288,711 - Echvi_0280 0.83 +1.8
288,844 - Echvi_0280 0.87 -1.4
288,844 - Echvi_0280 0.87 -0.7
288,869 + Echvi_0280 0.88 -0.5
288,989 + -0.7
288,989 + -1.6
288,990 - -2.2
289,010 + -2.5
289,031 + -2.8
289,032 - -1.0
289,161 + -1.6
289,162 - -1.2
289,215 + -0.7
289,215 + -0.6
289,216 - -0.8
289,231 - -1.5
289,244 + -0.2
289,251 + +0.2
289,284 - -0.8
289,290 + +0.2
289,290 + +1.7
289,291 - -3.5
289,322 - +1.2
289,334 + -3.2
289,335 - +0.8
289,387 + -3.4
289,387 + -0.3
289,388 - -1.6
289,388 - -2.0
289,388 - -2.5
289,388 - -1.2
289,432 - -0.8
289,526 + Echvi_0281 0.14 -1.9
289,526 + Echvi_0281 0.14 -2.5
289,530 - Echvi_0281 0.14 -0.4
289,592 + Echvi_0281 0.17 -1.2
289,593 - Echvi_0281 0.18 -0.4
289,593 - Echvi_0281 0.18 -1.6
289,593 - Echvi_0281 0.18 -0.4
289,593 - Echvi_0281 0.18 +0.2
289,593 - Echvi_0281 0.18 -2.1
289,593 - Echvi_0281 0.18 -0.4
289,596 + Echvi_0281 0.18 -0.9
289,596 + Echvi_0281 0.18 -0.8
289,597 - Echvi_0281 0.18 -1.3
289,597 - Echvi_0281 0.18 -2.0
289,597 - Echvi_0281 0.18 +1.0
289,597 - Echvi_0281 0.18 +1.2
289,597 - Echvi_0281 0.18 -1.2
289,597 - Echvi_0281 0.18 -0.2
289,602 + Echvi_0281 0.18 -1.2
289,602 + Echvi_0281 0.18 -0.2
289,602 + Echvi_0281 0.18 -1.1
289,602 + Echvi_0281 0.18 +1.6
289,603 - Echvi_0281 0.18 -2.2
289,603 - Echvi_0281 0.18 -1.5
289,617 - Echvi_0281 0.19 -0.8
289,637 - Echvi_0281 0.20 -1.8
289,637 - Echvi_0281 0.20 -1.7
289,697 + Echvi_0281 0.23 -0.0
289,710 + Echvi_0281 0.24 -0.6
289,731 + Echvi_0281 0.25 -0.0
289,734 + Echvi_0281 0.25 -0.8
289,764 + Echvi_0281 0.27 -0.0
289,785 + Echvi_0281 0.28 -1.6
289,832 - Echvi_0281 0.30 -0.6
289,832 - Echvi_0281 0.30 -0.7
289,895 + Echvi_0281 0.34 -0.8
289,927 + Echvi_0281 0.35 +2.2
289,935 + Echvi_0281 0.36 -2.2
290,022 + Echvi_0281 0.41 -0.0
290,113 + Echvi_0281 0.45 +1.2
290,113 + Echvi_0281 0.45 -1.7
290,151 + Echvi_0281 0.48 -0.1

Or see this region's nucleotide sequence