Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0796

Experiment: Lactulose 20mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0794 and Echvi_0795 overlap by 4 nucleotidesEchvi_0795 and Echvi_0796 are separated by 88 nucleotidesEchvi_0796 and Echvi_0797 overlap by 41 nucleotidesEchvi_0797 and Echvi_0798 are separated by 130 nucleotidesEchvi_0798 and Echvi_0799 overlap by 59 nucleotides Echvi_0794: Echvi_0794 - choline/carnitine/betaine transport, at 907,019 to 908,608 _0794 Echvi_0795: Echvi_0795 - Universal stress protein UspA and related nucleotide-binding proteins, at 908,605 to 909,462 _0795 Echvi_0796: Echvi_0796 - hypothetical protein, at 909,551 to 909,703 _0796 Echvi_0797: Echvi_0797 - Uncharacterised protein family (UPF0158)., at 909,663 to 910,103 _0797 Echvi_0798: Echvi_0798 - hypothetical protein, at 910,234 to 910,425 _0798 Echvi_0799: Echvi_0799 - Uncharacterized conserved protein, at 910,367 to 911,167 _0799 Position (kb) 909 910Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 908.671 kb on + strandat 908.671 kb on + strandat 908.674 kb on - strandat 908.902 kb on + strand, within Echvi_0795at 908.905 kb on - strand, within Echvi_0795at 909.076 kb on + strand, within Echvi_0795at 909.076 kb on + strand, within Echvi_0795at 909.076 kb on + strand, within Echvi_0795at 909.076 kb on + strand, within Echvi_0795at 909.076 kb on + strand, within Echvi_0795at 909.077 kb on - strand, within Echvi_0795at 909.077 kb on - strand, within Echvi_0795at 909.077 kb on - strand, within Echvi_0795at 909.077 kb on - strand, within Echvi_0795at 909.212 kb on + strand, within Echvi_0795at 909.291 kb on + strand, within Echvi_0795at 909.292 kb on - strand, within Echvi_0795at 909.303 kb on + strand, within Echvi_0795at 909.303 kb on + strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.485 kb on - strandat 909.485 kb on - strandat 909.487 kb on + strandat 909.487 kb on + strandat 909.487 kb on + strandat 909.488 kb on - strandat 909.488 kb on - strandat 909.500 kb on + strandat 909.518 kb on + strandat 909.526 kb on + strandat 909.593 kb on + strand, within Echvi_0796at 909.655 kb on + strand, within Echvi_0796at 909.655 kb on + strand, within Echvi_0796at 909.673 kb on - strandat 909.677 kb on + strandat 909.678 kb on - strandat 909.678 kb on - strandat 909.682 kb on + strandat 909.682 kb on + strandat 909.682 kb on + strandat 909.683 kb on - strandat 909.683 kb on - strandat 909.683 kb on - strandat 909.687 kb on - strandat 909.749 kb on + strand, within Echvi_0797at 909.751 kb on + strand, within Echvi_0797at 909.751 kb on + strand, within Echvi_0797at 909.751 kb on + strand, within Echvi_0797at 909.751 kb on + strand, within Echvi_0797at 909.751 kb on + strand, within Echvi_0797at 909.752 kb on - strand, within Echvi_0797at 909.752 kb on - strand, within Echvi_0797at 909.752 kb on - strand, within Echvi_0797at 909.798 kb on - strand, within Echvi_0797at 909.817 kb on + strand, within Echvi_0797at 909.817 kb on + strand, within Echvi_0797at 909.873 kb on + strand, within Echvi_0797at 909.873 kb on + strand, within Echvi_0797at 909.874 kb on - strand, within Echvi_0797at 910.036 kb on + strand, within Echvi_0797at 910.036 kb on + strand, within Echvi_0797at 910.037 kb on - strand, within Echvi_0797at 910.037 kb on - strand, within Echvi_0797at 910.037 kb on - strand, within Echvi_0797at 910.041 kb on + strand, within Echvi_0797at 910.041 kb on + strand, within Echvi_0797at 910.041 kb on + strand, within Echvi_0797at 910.042 kb on - strand, within Echvi_0797at 910.042 kb on - strand, within Echvi_0797at 910.042 kb on - strand, within Echvi_0797at 910.042 kb on - strand, within Echvi_0797at 910.042 kb on - strand, within Echvi_0797at 910.129 kb on + strandat 910.130 kb on - strandat 910.144 kb on + strandat 910.144 kb on + strandat 910.263 kb on + strand, within Echvi_0798at 910.265 kb on + strand, within Echvi_0798at 910.265 kb on + strand, within Echvi_0798at 910.266 kb on - strand, within Echvi_0798at 910.266 kb on - strand, within Echvi_0798at 910.282 kb on + strand, within Echvi_0798at 910.283 kb on - strand, within Echvi_0798at 910.307 kb on + strand, within Echvi_0798at 910.307 kb on + strand, within Echvi_0798at 910.307 kb on + strand, within Echvi_0798at 910.308 kb on - strand, within Echvi_0798at 910.384 kb on + strandat 910.427 kb on - strandat 910.428 kb on + strandat 910.429 kb on - strandat 910.429 kb on - strandat 910.448 kb on + strand, within Echvi_0799at 910.537 kb on + strand, within Echvi_0799at 910.538 kb on - strand, within Echvi_0799at 910.541 kb on - strand, within Echvi_0799at 910.556 kb on - strand, within Echvi_0799at 910.640 kb on + strand, within Echvi_0799at 910.640 kb on + strand, within Echvi_0799at 910.641 kb on - strand, within Echvi_0799at 910.670 kb on - strand, within Echvi_0799at 910.678 kb on - strand, within Echvi_0799at 910.678 kb on - strand, within Echvi_0799

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Lactulose 20mM (C)
remove
908,671 + +0.0
908,671 + -0.1
908,674 - +2.6
908,902 + Echvi_0795 0.35 -1.3
908,905 - Echvi_0795 0.35 +1.3
909,076 + Echvi_0795 0.55 -0.9
909,076 + Echvi_0795 0.55 +0.2
909,076 + Echvi_0795 0.55 -0.0
909,076 + Echvi_0795 0.55 +0.3
909,076 + Echvi_0795 0.55 -0.5
909,077 - Echvi_0795 0.55 +0.4
909,077 - Echvi_0795 0.55 +0.3
909,077 - Echvi_0795 0.55 +0.8
909,077 - Echvi_0795 0.55 +0.4
909,212 + Echvi_0795 0.71 +1.2
909,291 + Echvi_0795 0.80 -0.5
909,292 - Echvi_0795 0.80 +0.7
909,303 + Echvi_0795 0.81 +0.1
909,303 + Echvi_0795 0.81 -1.1
909,304 - Echvi_0795 0.81 +1.7
909,304 - Echvi_0795 0.81 +1.8
909,304 - Echvi_0795 0.81 +0.5
909,304 - Echvi_0795 0.81 +0.8
909,304 - Echvi_0795 0.81 +0.4
909,485 - -1.2
909,485 - +0.1
909,487 + +1.5
909,487 + +0.0
909,487 + -0.5
909,488 - +1.4
909,488 - -0.3
909,500 + +2.9
909,518 + -0.6
909,526 + +0.1
909,593 + Echvi_0796 0.27 -0.7
909,655 + Echvi_0796 0.68 -1.7
909,655 + Echvi_0796 0.68 -2.4
909,673 - -1.2
909,677 + +0.4
909,678 - +0.3
909,678 - +0.8
909,682 + -0.1
909,682 + -0.4
909,682 + +1.0
909,683 - +2.1
909,683 - +0.3
909,683 - -0.8
909,687 - +0.1
909,749 + Echvi_0797 0.20 -0.0
909,751 + Echvi_0797 0.20 -0.6
909,751 + Echvi_0797 0.20 -0.4
909,751 + Echvi_0797 0.20 -0.4
909,751 + Echvi_0797 0.20 -0.9
909,751 + Echvi_0797 0.20 -0.4
909,752 - Echvi_0797 0.20 -0.5
909,752 - Echvi_0797 0.20 +1.3
909,752 - Echvi_0797 0.20 +0.5
909,798 - Echvi_0797 0.31 -0.0
909,817 + Echvi_0797 0.35 -2.3
909,817 + Echvi_0797 0.35 +0.6
909,873 + Echvi_0797 0.48 -2.6
909,873 + Echvi_0797 0.48 -0.4
909,874 - Echvi_0797 0.48 -1.2
910,036 + Echvi_0797 0.85 -0.1
910,036 + Echvi_0797 0.85 -0.2
910,037 - Echvi_0797 0.85 -0.2
910,037 - Echvi_0797 0.85 -0.5
910,037 - Echvi_0797 0.85 +0.1
910,041 + Echvi_0797 0.86 +0.1
910,041 + Echvi_0797 0.86 -3.5
910,041 + Echvi_0797 0.86 +0.5
910,042 - Echvi_0797 0.86 +0.5
910,042 - Echvi_0797 0.86 +0.2
910,042 - Echvi_0797 0.86 +1.2
910,042 - Echvi_0797 0.86 +0.2
910,042 - Echvi_0797 0.86 +0.2
910,129 + +0.3
910,130 - +0.3
910,144 + -0.1
910,144 + +0.2
910,263 + Echvi_0798 0.15 -1.3
910,265 + Echvi_0798 0.16 +3.3
910,265 + Echvi_0798 0.16 +0.3
910,266 - Echvi_0798 0.17 -0.0
910,266 - Echvi_0798 0.17 -1.7
910,282 + Echvi_0798 0.25 -0.3
910,283 - Echvi_0798 0.26 +2.3
910,307 + Echvi_0798 0.38 -0.1
910,307 + Echvi_0798 0.38 +1.3
910,307 + Echvi_0798 0.38 +0.0
910,308 - Echvi_0798 0.39 +2.0
910,384 + -1.0
910,427 - +0.3
910,428 + -0.6
910,429 - -0.6
910,429 - -0.2
910,448 + Echvi_0799 0.10 -0.7
910,537 + Echvi_0799 0.21 +1.0
910,538 - Echvi_0799 0.21 +0.2
910,541 - Echvi_0799 0.22 +2.9
910,556 - Echvi_0799 0.24 +0.8
910,640 + Echvi_0799 0.34 -0.8
910,640 + Echvi_0799 0.34 -0.8
910,641 - Echvi_0799 0.34 -1.2
910,670 - Echvi_0799 0.38 +0.5
910,678 - Echvi_0799 0.39 +0.2
910,678 - Echvi_0799 0.39 +1.5

Or see this region's nucleotide sequence