Experiment: Lactulose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0151 and Echvi_0152 are separated by 219 nucleotides Echvi_0152 and Echvi_0153 are separated by 205 nucleotides
Echvi_0151: Echvi_0151 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 151,084 to 152,757
_0151
Echvi_0152: Echvi_0152 - GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit, at 152,977 to 154,506
_0152
Echvi_0153: Echvi_0153 - Predicted dehydrogenases and related proteins, at 154,712 to 156,124
_0153
Position (kb) 152
153
154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 152.772 kb on + strand at 152.773 kb on - strand at 152.822 kb on - strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.628 kb on - strand at 154.632 kb on + strand at 154.646 kb on + strand at 154.667 kb on + strand at 154.721 kb on + strand at 154.722 kb on - strand at 154.750 kb on + strand at 154.813 kb on + strand at 154.875 kb on + strand, within Echvi_0153 at 154.876 kb on - strand, within Echvi_0153 at 154.876 kb on - strand, within Echvi_0153 at 155.197 kb on + strand, within Echvi_0153 at 155.203 kb on + strand, within Echvi_0153 at 155.222 kb on - strand, within Echvi_0153 at 155.229 kb on + strand, within Echvi_0153 at 155.446 kb on + strand, within Echvi_0153 at 155.471 kb on + strand, within Echvi_0153 at 155.471 kb on + strand, within Echvi_0153 at 155.471 kb on + strand, within Echvi_0153 at 155.471 kb on + strand, within Echvi_0153 at 155.471 kb on + strand, within Echvi_0153 at 155.471 kb on + strand, within Echvi_0153 at 155.471 kb on + strand, within Echvi_0153 at 155.472 kb on - strand, within Echvi_0153 at 155.472 kb on - strand, within Echvi_0153 at 155.473 kb on + strand, within Echvi_0153 at 155.474 kb on - strand, within Echvi_0153 at 155.475 kb on + strand, within Echvi_0153 at 155.475 kb on + strand, within Echvi_0153 at 155.475 kb on + strand, within Echvi_0153 at 155.475 kb on + strand, within Echvi_0153 at 155.475 kb on + strand, within Echvi_0153 at 155.476 kb on - strand, within Echvi_0153
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose 20mM (C) remove 152,772 + +3.5 152,773 - -1.8 152,822 - -3.3 154,624 + -0.5 154,624 + +1.2 154,628 - -1.4 154,632 + +0.6 154,646 + +0.9 154,667 + +0.8 154,721 + -1.0 154,722 - -2.7 154,750 + +1.2 154,813 + +0.1 154,875 + Echvi_0153 0.12 +0.8 154,876 - Echvi_0153 0.12 +0.1 154,876 - Echvi_0153 0.12 +0.5 155,197 + Echvi_0153 0.34 +0.1 155,203 + Echvi_0153 0.35 -1.1 155,222 - Echvi_0153 0.36 -0.9 155,229 + Echvi_0153 0.37 -0.2 155,446 + Echvi_0153 0.52 -0.4 155,471 + Echvi_0153 0.54 +1.0 155,471 + Echvi_0153 0.54 +1.2 155,471 + Echvi_0153 0.54 -0.9 155,471 + Echvi_0153 0.54 -0.6 155,471 + Echvi_0153 0.54 -0.4 155,471 + Echvi_0153 0.54 -1.6 155,471 + Echvi_0153 0.54 +1.2 155,472 - Echvi_0153 0.54 -0.3 155,472 - Echvi_0153 0.54 +0.5 155,473 + Echvi_0153 0.54 +0.1 155,474 - Echvi_0153 0.54 +0.2 155,475 + Echvi_0153 0.54 +1.8 155,475 + Echvi_0153 0.54 -0.7 155,475 + Echvi_0153 0.54 -0.6 155,475 + Echvi_0153 0.54 +1.5 155,475 + Echvi_0153 0.54 +0.2 155,476 - Echvi_0153 0.54 +0.6
Or see this region's nucleotide sequence