Experiment: Lactulose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0149 and Echvi_0150 are separated by 112 nucleotides Echvi_0150 and Echvi_0151 are separated by 9 nucleotides
Echvi_0149: Echvi_0149 - Protein of unknown function (DUF3667)., at 148,635 to 149,672
_0149
Echvi_0150: Echvi_0150 - glutamate-1-semialdehyde-2,1-aminomutase, at 149,785 to 151,074
_0150
Echvi_0151: Echvi_0151 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 151,084 to 152,757
_0151
Position (kb) 149
150
151
152 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 148.825 kb on + strand, within Echvi_0149 at 148.829 kb on - strand, within Echvi_0149 at 148.879 kb on - strand, within Echvi_0149 at 148.879 kb on - strand, within Echvi_0149 at 148.900 kb on - strand, within Echvi_0149 at 148.921 kb on - strand, within Echvi_0149 at 148.957 kb on + strand, within Echvi_0149 at 148.957 kb on + strand, within Echvi_0149 at 149.015 kb on + strand, within Echvi_0149 at 149.070 kb on - strand, within Echvi_0149 at 149.109 kb on + strand, within Echvi_0149 at 149.138 kb on + strand, within Echvi_0149 at 149.138 kb on + strand, within Echvi_0149 at 149.160 kb on - strand, within Echvi_0149 at 149.202 kb on + strand, within Echvi_0149 at 149.226 kb on + strand, within Echvi_0149 at 149.227 kb on - strand, within Echvi_0149 at 149.245 kb on + strand, within Echvi_0149 at 149.246 kb on - strand, within Echvi_0149 at 149.388 kb on + strand, within Echvi_0149 at 149.388 kb on + strand, within Echvi_0149 at 149.392 kb on - strand, within Echvi_0149 at 149.441 kb on + strand, within Echvi_0149 at 149.441 kb on + strand, within Echvi_0149 at 149.441 kb on + strand, within Echvi_0149 at 149.441 kb on + strand, within Echvi_0149 at 149.441 kb on + strand, within Echvi_0149 at 149.441 kb on + strand, within Echvi_0149 at 149.442 kb on - strand, within Echvi_0149 at 149.442 kb on - strand, within Echvi_0149 at 149.442 kb on - strand, within Echvi_0149 at 149.445 kb on + strand, within Echvi_0149 at 149.446 kb on - strand, within Echvi_0149 at 149.498 kb on + strand, within Echvi_0149 at 149.529 kb on + strand, within Echvi_0149 at 149.529 kb on + strand, within Echvi_0149 at 149.529 kb on + strand, within Echvi_0149 at 149.529 kb on + strand, within Echvi_0149 at 149.529 kb on + strand, within Echvi_0149 at 149.530 kb on - strand, within Echvi_0149 at 149.530 kb on - strand, within Echvi_0149 at 149.530 kb on - strand, within Echvi_0149 at 149.530 kb on - strand, within Echvi_0149 at 149.535 kb on + strand, within Echvi_0149 at 149.535 kb on + strand, within Echvi_0149 at 149.535 kb on + strand, within Echvi_0149 at 149.535 kb on + strand, within Echvi_0149 at 149.535 kb on + strand, within Echvi_0149 at 149.535 kb on + strand, within Echvi_0149 at 149.536 kb on - strand, within Echvi_0149 at 149.536 kb on - strand, within Echvi_0149 at 149.536 kb on - strand, within Echvi_0149 at 149.536 kb on - strand, within Echvi_0149 at 149.536 kb on - strand, within Echvi_0149 at 149.536 kb on - strand, within Echvi_0149 at 149.536 kb on - strand, within Echvi_0149 at 149.536 kb on - strand, within Echvi_0149 at 149.650 kb on - strand at 149.653 kb on + strand at 149.654 kb on - strand at 149.762 kb on + strand at 149.764 kb on + strand at 149.779 kb on - strand at 151.076 kb on - strand at 151.114 kb on - strand at 151.874 kb on - strand, within Echvi_0151
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose 20mM (C) remove 148,825 + Echvi_0149 0.18 -0.1 148,829 - Echvi_0149 0.19 +1.9 148,879 - Echvi_0149 0.24 +1.3 148,879 - Echvi_0149 0.24 +0.4 148,900 - Echvi_0149 0.26 +0.4 148,921 - Echvi_0149 0.28 -0.6 148,957 + Echvi_0149 0.31 -1.1 148,957 + Echvi_0149 0.31 +0.6 149,015 + Echvi_0149 0.37 +0.6 149,070 - Echvi_0149 0.42 -0.5 149,109 + Echvi_0149 0.46 -0.4 149,138 + Echvi_0149 0.48 -0.2 149,138 + Echvi_0149 0.48 -0.4 149,160 - Echvi_0149 0.51 +0.2 149,202 + Echvi_0149 0.55 -0.4 149,226 + Echvi_0149 0.57 +1.2 149,227 - Echvi_0149 0.57 +0.8 149,245 + Echvi_0149 0.59 +0.8 149,246 - Echvi_0149 0.59 +1.2 149,388 + Echvi_0149 0.73 -0.7 149,388 + Echvi_0149 0.73 -1.4 149,392 - Echvi_0149 0.73 -0.4 149,441 + Echvi_0149 0.78 +0.6 149,441 + Echvi_0149 0.78 +0.4 149,441 + Echvi_0149 0.78 +1.1 149,441 + Echvi_0149 0.78 +2.8 149,441 + Echvi_0149 0.78 -0.4 149,441 + Echvi_0149 0.78 -0.2 149,442 - Echvi_0149 0.78 +0.1 149,442 - Echvi_0149 0.78 -1.6 149,442 - Echvi_0149 0.78 -0.7 149,445 + Echvi_0149 0.78 +0.6 149,446 - Echvi_0149 0.78 +1.1 149,498 + Echvi_0149 0.83 +1.4 149,529 + Echvi_0149 0.86 +0.9 149,529 + Echvi_0149 0.86 -0.8 149,529 + Echvi_0149 0.86 -0.6 149,529 + Echvi_0149 0.86 -0.1 149,529 + Echvi_0149 0.86 +0.3 149,530 - Echvi_0149 0.86 +0.3 149,530 - Echvi_0149 0.86 +1.1 149,530 - Echvi_0149 0.86 +1.1 149,530 - Echvi_0149 0.86 -1.9 149,535 + Echvi_0149 0.87 +0.3 149,535 + Echvi_0149 0.87 +0.0 149,535 + Echvi_0149 0.87 -0.0 149,535 + Echvi_0149 0.87 -0.1 149,535 + Echvi_0149 0.87 -0.8 149,535 + Echvi_0149 0.87 -1.4 149,536 - Echvi_0149 0.87 -0.1 149,536 - Echvi_0149 0.87 +0.6 149,536 - Echvi_0149 0.87 -0.8 149,536 - Echvi_0149 0.87 +0.5 149,536 - Echvi_0149 0.87 -2.0 149,536 - Echvi_0149 0.87 -0.8 149,536 - Echvi_0149 0.87 -2.0 149,536 - Echvi_0149 0.87 -0.0 149,650 - -1.2 149,653 + +0.6 149,654 - -1.8 149,762 + +1.0 149,764 + -0.8 149,779 - +1.9 151,076 - -2.1 151,114 - -1.5 151,874 - Echvi_0151 0.47 +0.2
Or see this region's nucleotide sequence