Strain Fitness in Escherichia coli BW25113 around b3883

Experiment: 3-methyl-3-butenol 0.625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyihU and yihV are separated by 167 nucleotidesyihV and yihW are separated by 33 nucleotidesyihW and yihX are separated by 98 nucleotides b3882: yihU - predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain (NCBI), at 4,070,698 to 4,071,594 yihU b3883: yihV - putative kinase (VIMSS), at 4,071,762 to 4,072,658 yihV b3884: yihW - putative DEOR-type transcriptional regulator (VIMSS), at 4,072,692 to 4,073,477 yihW b3885: yihX - putative phosphatase (VIMSS), at 4,073,576 to 4,074,175 yihX Position (kb) 4071 4072 4073Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4070.769 kb on - strandat 4070.888 kb on - strand, within yihUat 4070.925 kb on - strand, within yihUat 4070.925 kb on - strand, within yihUat 4070.946 kb on - strand, within yihUat 4070.977 kb on + strand, within yihUat 4071.052 kb on - strand, within yihUat 4071.068 kb on - strand, within yihUat 4071.079 kb on - strand, within yihUat 4071.124 kb on + strand, within yihUat 4071.140 kb on + strand, within yihUat 4071.149 kb on + strand, within yihUat 4071.149 kb on + strand, within yihUat 4071.176 kb on - strand, within yihUat 4071.189 kb on + strand, within yihUat 4071.189 kb on + strand, within yihUat 4071.221 kb on + strand, within yihUat 4071.240 kb on - strand, within yihUat 4071.290 kb on + strand, within yihUat 4071.290 kb on + strand, within yihUat 4071.300 kb on + strand, within yihUat 4071.465 kb on - strand, within yihUat 4071.478 kb on + strand, within yihUat 4071.478 kb on + strand, within yihUat 4071.524 kb on - strandat 4071.524 kb on - strandat 4071.729 kb on - strandat 4071.783 kb on + strandat 4071.806 kb on + strandat 4071.806 kb on + strandat 4071.819 kb on - strandat 4071.819 kb on - strandat 4071.827 kb on + strandat 4071.827 kb on + strandat 4072.017 kb on + strand, within yihVat 4072.051 kb on + strand, within yihVat 4072.058 kb on + strand, within yihVat 4072.090 kb on + strand, within yihVat 4072.090 kb on + strand, within yihVat 4072.148 kb on + strand, within yihVat 4072.158 kb on + strand, within yihVat 4072.158 kb on + strand, within yihVat 4072.171 kb on - strand, within yihVat 4072.171 kb on - strand, within yihVat 4072.286 kb on - strand, within yihVat 4072.343 kb on + strand, within yihVat 4072.395 kb on + strand, within yihVat 4072.395 kb on + strand, within yihVat 4072.395 kb on + strand, within yihVat 4072.403 kb on - strand, within yihVat 4072.403 kb on - strand, within yihVat 4072.475 kb on - strand, within yihVat 4072.475 kb on - strand, within yihVat 4072.477 kb on + strand, within yihVat 4072.533 kb on - strand, within yihVat 4072.592 kb on + strandat 4072.613 kb on + strandat 4072.613 kb on + strandat 4072.735 kb on + strandat 4072.745 kb on - strandat 4072.760 kb on + strandat 4072.760 kb on + strandat 4072.768 kb on - strandat 4072.770 kb on - strandat 4072.798 kb on + strand, within yihWat 4072.854 kb on - strand, within yihWat 4072.930 kb on - strand, within yihWat 4073.011 kb on - strand, within yihWat 4073.013 kb on + strand, within yihWat 4073.018 kb on - strand, within yihWat 4073.018 kb on - strand, within yihWat 4073.138 kb on - strand, within yihWat 4073.138 kb on - strand, within yihWat 4073.143 kb on + strand, within yihWat 4073.150 kb on - strand, within yihWat 4073.242 kb on - strand, within yihWat 4073.255 kb on - strand, within yihWat 4073.330 kb on + strand, within yihWat 4073.330 kb on + strand, within yihWat 4073.376 kb on - strand, within yihWat 4073.376 kb on - strand, within yihWat 4073.423 kb on - strandat 4073.499 kb on + strandat 4073.499 kb on + strandat 4073.500 kb on + strandat 4073.509 kb on + strandat 4073.599 kb on - strandat 4073.599 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-3-butenol 0.625 vol%
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4,070,769 - +0.3
4,070,888 - yihU b3882 0.21 -1.6
4,070,925 - yihU b3882 0.25 +0.6
4,070,925 - yihU b3882 0.25 -1.3
4,070,946 - yihU b3882 0.28 +0.7
4,070,977 + yihU b3882 0.31 +1.6
4,071,052 - yihU b3882 0.39 -0.5
4,071,068 - yihU b3882 0.41 -0.7
4,071,079 - yihU b3882 0.42 -0.3
4,071,124 + yihU b3882 0.47 +1.0
4,071,140 + yihU b3882 0.49 +0.0
4,071,149 + yihU b3882 0.50 -0.5
4,071,149 + yihU b3882 0.50 -1.0
4,071,176 - yihU b3882 0.53 +0.7
4,071,189 + yihU b3882 0.55 +0.2
4,071,189 + yihU b3882 0.55 -0.8
4,071,221 + yihU b3882 0.58 -0.3
4,071,240 - yihU b3882 0.60 -0.4
4,071,290 + yihU b3882 0.66 +1.0
4,071,290 + yihU b3882 0.66 +0.1
4,071,300 + yihU b3882 0.67 +0.5
4,071,465 - yihU b3882 0.86 -0.2
4,071,478 + yihU b3882 0.87 -0.0
4,071,478 + yihU b3882 0.87 -0.1
4,071,524 - +0.1
4,071,524 - -0.8
4,071,729 - +0.4
4,071,783 + +0.2
4,071,806 + +1.5
4,071,806 + -0.9
4,071,819 - -0.3
4,071,819 - +1.1
4,071,827 + +0.1
4,071,827 + -0.8
4,072,017 + yihV b3883 0.28 +0.2
4,072,051 + yihV b3883 0.32 +1.2
4,072,058 + yihV b3883 0.33 +0.4
4,072,090 + yihV b3883 0.37 +0.4
4,072,090 + yihV b3883 0.37 +0.2
4,072,148 + yihV b3883 0.43 +0.4
4,072,158 + yihV b3883 0.44 +0.4
4,072,158 + yihV b3883 0.44 +0.9
4,072,171 - yihV b3883 0.46 +0.5
4,072,171 - yihV b3883 0.46 +0.3
4,072,286 - yihV b3883 0.58 +1.4
4,072,343 + yihV b3883 0.65 +0.5
4,072,395 + yihV b3883 0.71 -0.3
4,072,395 + yihV b3883 0.71 +0.6
4,072,395 + yihV b3883 0.71 -1.6
4,072,403 - yihV b3883 0.71 +0.4
4,072,403 - yihV b3883 0.71 -0.8
4,072,475 - yihV b3883 0.79 -1.1
4,072,475 - yihV b3883 0.79 -0.1
4,072,477 + yihV b3883 0.80 +0.6
4,072,533 - yihV b3883 0.86 +0.1
4,072,592 + -0.6
4,072,613 + -0.8
4,072,613 + +0.5
4,072,735 + -0.3
4,072,745 - +0.4
4,072,760 + -0.7
4,072,760 + +0.1
4,072,768 - +0.6
4,072,770 - -0.2
4,072,798 + yihW b3884 0.13 -0.7
4,072,854 - yihW b3884 0.21 -0.0
4,072,930 - yihW b3884 0.30 -0.6
4,073,011 - yihW b3884 0.41 -1.6
4,073,013 + yihW b3884 0.41 +0.1
4,073,018 - yihW b3884 0.41 -0.5
4,073,018 - yihW b3884 0.41 +0.3
4,073,138 - yihW b3884 0.57 -0.9
4,073,138 - yihW b3884 0.57 -0.8
4,073,143 + yihW b3884 0.57 -0.4
4,073,150 - yihW b3884 0.58 +0.3
4,073,242 - yihW b3884 0.70 +0.2
4,073,255 - yihW b3884 0.72 -0.1
4,073,330 + yihW b3884 0.81 -0.1
4,073,330 + yihW b3884 0.81 +0.2
4,073,376 - yihW b3884 0.87 -0.3
4,073,376 - yihW b3884 0.87 -1.7
4,073,423 - +0.0
4,073,499 + -1.9
4,073,499 + +0.3
4,073,500 + +3.1
4,073,509 + -0.9
4,073,599 - +1.5
4,073,599 - -0.2

Or see this region's nucleotide sequence