Strain Fitness in Escherichia coli BW25113 around b3883
Experiment: 3-methyl-3-butenol 0.625 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 3-methyl-3-butenol 0.625 vol% |
---|---|---|---|---|---|
remove | |||||
4,070,769 | - | +0.3 | |||
4,070,888 | - | yihU | b3882 | 0.21 | -1.6 |
4,070,925 | - | yihU | b3882 | 0.25 | +0.6 |
4,070,925 | - | yihU | b3882 | 0.25 | -1.3 |
4,070,946 | - | yihU | b3882 | 0.28 | +0.7 |
4,070,977 | + | yihU | b3882 | 0.31 | +1.6 |
4,071,052 | - | yihU | b3882 | 0.39 | -0.5 |
4,071,068 | - | yihU | b3882 | 0.41 | -0.7 |
4,071,079 | - | yihU | b3882 | 0.42 | -0.3 |
4,071,124 | + | yihU | b3882 | 0.47 | +1.0 |
4,071,140 | + | yihU | b3882 | 0.49 | +0.0 |
4,071,149 | + | yihU | b3882 | 0.50 | -0.5 |
4,071,149 | + | yihU | b3882 | 0.50 | -1.0 |
4,071,176 | - | yihU | b3882 | 0.53 | +0.7 |
4,071,189 | + | yihU | b3882 | 0.55 | +0.2 |
4,071,189 | + | yihU | b3882 | 0.55 | -0.8 |
4,071,221 | + | yihU | b3882 | 0.58 | -0.3 |
4,071,240 | - | yihU | b3882 | 0.60 | -0.4 |
4,071,290 | + | yihU | b3882 | 0.66 | +1.0 |
4,071,290 | + | yihU | b3882 | 0.66 | +0.1 |
4,071,300 | + | yihU | b3882 | 0.67 | +0.5 |
4,071,465 | - | yihU | b3882 | 0.86 | -0.2 |
4,071,478 | + | yihU | b3882 | 0.87 | -0.0 |
4,071,478 | + | yihU | b3882 | 0.87 | -0.1 |
4,071,524 | - | +0.1 | |||
4,071,524 | - | -0.8 | |||
4,071,729 | - | +0.4 | |||
4,071,783 | + | +0.2 | |||
4,071,806 | + | +1.5 | |||
4,071,806 | + | -0.9 | |||
4,071,819 | - | -0.3 | |||
4,071,819 | - | +1.1 | |||
4,071,827 | + | +0.1 | |||
4,071,827 | + | -0.8 | |||
4,072,017 | + | yihV | b3883 | 0.28 | +0.2 |
4,072,051 | + | yihV | b3883 | 0.32 | +1.2 |
4,072,058 | + | yihV | b3883 | 0.33 | +0.4 |
4,072,090 | + | yihV | b3883 | 0.37 | +0.4 |
4,072,090 | + | yihV | b3883 | 0.37 | +0.2 |
4,072,148 | + | yihV | b3883 | 0.43 | +0.4 |
4,072,158 | + | yihV | b3883 | 0.44 | +0.4 |
4,072,158 | + | yihV | b3883 | 0.44 | +0.9 |
4,072,171 | - | yihV | b3883 | 0.46 | +0.5 |
4,072,171 | - | yihV | b3883 | 0.46 | +0.3 |
4,072,286 | - | yihV | b3883 | 0.58 | +1.4 |
4,072,343 | + | yihV | b3883 | 0.65 | +0.5 |
4,072,395 | + | yihV | b3883 | 0.71 | -0.3 |
4,072,395 | + | yihV | b3883 | 0.71 | +0.6 |
4,072,395 | + | yihV | b3883 | 0.71 | -1.6 |
4,072,403 | - | yihV | b3883 | 0.71 | +0.4 |
4,072,403 | - | yihV | b3883 | 0.71 | -0.8 |
4,072,475 | - | yihV | b3883 | 0.79 | -1.1 |
4,072,475 | - | yihV | b3883 | 0.79 | -0.1 |
4,072,477 | + | yihV | b3883 | 0.80 | +0.6 |
4,072,533 | - | yihV | b3883 | 0.86 | +0.1 |
4,072,592 | + | -0.6 | |||
4,072,613 | + | -0.8 | |||
4,072,613 | + | +0.5 | |||
4,072,735 | + | -0.3 | |||
4,072,745 | - | +0.4 | |||
4,072,760 | + | -0.7 | |||
4,072,760 | + | +0.1 | |||
4,072,768 | - | +0.6 | |||
4,072,770 | - | -0.2 | |||
4,072,798 | + | yihW | b3884 | 0.13 | -0.7 |
4,072,854 | - | yihW | b3884 | 0.21 | -0.0 |
4,072,930 | - | yihW | b3884 | 0.30 | -0.6 |
4,073,011 | - | yihW | b3884 | 0.41 | -1.6 |
4,073,013 | + | yihW | b3884 | 0.41 | +0.1 |
4,073,018 | - | yihW | b3884 | 0.41 | -0.5 |
4,073,018 | - | yihW | b3884 | 0.41 | +0.3 |
4,073,138 | - | yihW | b3884 | 0.57 | -0.9 |
4,073,138 | - | yihW | b3884 | 0.57 | -0.8 |
4,073,143 | + | yihW | b3884 | 0.57 | -0.4 |
4,073,150 | - | yihW | b3884 | 0.58 | +0.3 |
4,073,242 | - | yihW | b3884 | 0.70 | +0.2 |
4,073,255 | - | yihW | b3884 | 0.72 | -0.1 |
4,073,330 | + | yihW | b3884 | 0.81 | -0.1 |
4,073,330 | + | yihW | b3884 | 0.81 | +0.2 |
4,073,376 | - | yihW | b3884 | 0.87 | -0.3 |
4,073,376 | - | yihW | b3884 | 0.87 | -1.7 |
4,073,423 | - | +0.0 | |||
4,073,499 | + | -1.9 | |||
4,073,499 | + | +0.3 | |||
4,073,500 | + | +3.1 | |||
4,073,509 | + | -0.9 | |||
4,073,599 | - | +1.5 | |||
4,073,599 | - | -0.2 |
Or see this region's nucleotide sequence