Strain Fitness in Escherichia coli BW25113 around b0928
Experiment: 3-methyl-3-butenol 0.625 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 3-methyl-3-butenol 0.625 vol% |
---|---|---|---|---|---|
remove | |||||
982,765 | - | ycbK | b0926 | 0.85 | -0.1 |
982,779 | + | ycbK | b0926 | 0.88 | -0.1 |
982,790 | - | ycbK | b0926 | 0.90 | +0.5 |
982,792 | - | +0.2 | |||
982,818 | - | +0.4 | |||
982,850 | - | +0.7 | |||
983,009 | + | ycbL | b0927 | 0.21 | +0.2 |
983,020 | + | ycbL | b0927 | 0.23 | -0.1 |
983,020 | + | ycbL | b0927 | 0.23 | +0.7 |
983,050 | - | ycbL | b0927 | 0.27 | +1.4 |
983,050 | - | ycbL | b0927 | 0.27 | +0.6 |
983,052 | - | ycbL | b0927 | 0.28 | -0.8 |
983,052 | - | ycbL | b0927 | 0.28 | +0.3 |
983,423 | - | ycbL | b0927 | 0.85 | +0.1 |
983,522 | - | -0.3 | |||
983,586 | - | -0.1 | |||
983,691 | - | -0.2 | |||
983,786 | - | -1.5 | |||
983,786 | - | -2.2 | |||
983,884 | + | aspC | b0928 | 0.12 | +0.1 |
983,983 | - | aspC | b0928 | 0.20 | -0.6 |
984,232 | - | aspC | b0928 | 0.41 | -0.0 |
984,326 | + | aspC | b0928 | 0.49 | -0.4 |
984,365 | - | aspC | b0928 | 0.52 | -0.3 |
984,402 | + | aspC | b0928 | 0.55 | -1.3 |
984,402 | + | aspC | b0928 | 0.55 | -0.2 |
984,535 | - | aspC | b0928 | 0.67 | -0.9 |
984,560 | + | aspC | b0928 | 0.69 | -0.2 |
984,560 | + | aspC | b0928 | 0.69 | -0.6 |
984,633 | + | aspC | b0928 | 0.75 | -0.7 |
984,633 | + | aspC | b0928 | 0.75 | +1.0 |
984,683 | - | aspC | b0928 | 0.79 | -0.8 |
984,792 | + | aspC | b0928 | 0.88 | +0.3 |
984,939 | + | -0.5 | |||
984,942 | + | -0.9 | |||
984,944 | + | -0.3 | |||
984,975 | + | -0.0 | |||
985,123 | - | -0.9 | |||
985,169 | + | +0.6 | |||
985,240 | + | ompF | b0929 | 0.11 | -0.4 |
985,259 | - | ompF | b0929 | 0.13 | +0.6 |
985,483 | + | ompF | b0929 | 0.34 | +0.6 |
985,548 | - | ompF | b0929 | 0.40 | -0.9 |
985,548 | - | ompF | b0929 | 0.40 | -0.1 |
985,682 | + | ompF | b0929 | 0.52 | -0.1 |
985,682 | + | ompF | b0929 | 0.52 | -0.1 |
985,805 | + | ompF | b0929 | 0.63 | +0.4 |
985,813 | - | ompF | b0929 | 0.64 | -0.6 |
985,880 | - | ompF | b0929 | 0.70 | +0.1 |
Or see this region's nucleotide sequence