Strain Fitness in Escherichia coli BW25113 around b0928

Experiment: 3-methyl-3-butenol 0.625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycbK and ycbL are separated by 26 nucleotidesycbL and aspC are separated by 221 nucleotidesaspC and ompF are separated by 184 nucleotides b0926: ycbK - hypothetical protein (NCBI), at 982,298 to 982,846 ycbK b0927: ycbL - predicted metal-binding enzyme (NCBI), at 982,873 to 983,520 ycbL b0928: aspC - aspartate aminotransferase, PLP-dependent (NCBI), at 983,742 to 984,932 aspC b0929: ompF - outer membrane porin 1a (Ia;b;F) (NCBI), at 985,117 to 986,205 ompF Position (kb) 983 984 985Strain fitness (log2 ratio) -2 -1 0 1at 982.765 kb on - strand, within ycbKat 982.779 kb on + strand, within ycbKat 982.790 kb on - strand, within ycbKat 982.792 kb on - strandat 982.818 kb on - strandat 982.850 kb on - strandat 983.009 kb on + strand, within ycbLat 983.020 kb on + strand, within ycbLat 983.020 kb on + strand, within ycbLat 983.050 kb on - strand, within ycbLat 983.050 kb on - strand, within ycbLat 983.052 kb on - strand, within ycbLat 983.052 kb on - strand, within ycbLat 983.423 kb on - strand, within ycbLat 983.522 kb on - strandat 983.586 kb on - strandat 983.691 kb on - strandat 983.786 kb on - strandat 983.786 kb on - strandat 983.884 kb on + strand, within aspCat 983.983 kb on - strand, within aspCat 984.232 kb on - strand, within aspCat 984.326 kb on + strand, within aspCat 984.365 kb on - strand, within aspCat 984.402 kb on + strand, within aspCat 984.402 kb on + strand, within aspCat 984.535 kb on - strand, within aspCat 984.560 kb on + strand, within aspCat 984.560 kb on + strand, within aspCat 984.633 kb on + strand, within aspCat 984.633 kb on + strand, within aspCat 984.683 kb on - strand, within aspCat 984.792 kb on + strand, within aspCat 984.939 kb on + strandat 984.942 kb on + strandat 984.944 kb on + strandat 984.975 kb on + strandat 985.123 kb on - strandat 985.169 kb on + strandat 985.240 kb on + strand, within ompFat 985.259 kb on - strand, within ompFat 985.483 kb on + strand, within ompFat 985.548 kb on - strand, within ompFat 985.548 kb on - strand, within ompFat 985.682 kb on + strand, within ompFat 985.682 kb on + strand, within ompFat 985.805 kb on + strand, within ompFat 985.813 kb on - strand, within ompFat 985.880 kb on - strand, within ompF

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-3-butenol 0.625 vol%
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982,765 - ycbK b0926 0.85 -0.1
982,779 + ycbK b0926 0.88 -0.1
982,790 - ycbK b0926 0.90 +0.5
982,792 - +0.2
982,818 - +0.4
982,850 - +0.7
983,009 + ycbL b0927 0.21 +0.2
983,020 + ycbL b0927 0.23 -0.1
983,020 + ycbL b0927 0.23 +0.7
983,050 - ycbL b0927 0.27 +1.4
983,050 - ycbL b0927 0.27 +0.6
983,052 - ycbL b0927 0.28 -0.8
983,052 - ycbL b0927 0.28 +0.3
983,423 - ycbL b0927 0.85 +0.1
983,522 - -0.3
983,586 - -0.1
983,691 - -0.2
983,786 - -1.5
983,786 - -2.2
983,884 + aspC b0928 0.12 +0.1
983,983 - aspC b0928 0.20 -0.6
984,232 - aspC b0928 0.41 -0.0
984,326 + aspC b0928 0.49 -0.4
984,365 - aspC b0928 0.52 -0.3
984,402 + aspC b0928 0.55 -1.3
984,402 + aspC b0928 0.55 -0.2
984,535 - aspC b0928 0.67 -0.9
984,560 + aspC b0928 0.69 -0.2
984,560 + aspC b0928 0.69 -0.6
984,633 + aspC b0928 0.75 -0.7
984,633 + aspC b0928 0.75 +1.0
984,683 - aspC b0928 0.79 -0.8
984,792 + aspC b0928 0.88 +0.3
984,939 + -0.5
984,942 + -0.9
984,944 + -0.3
984,975 + -0.0
985,123 - -0.9
985,169 + +0.6
985,240 + ompF b0929 0.11 -0.4
985,259 - ompF b0929 0.13 +0.6
985,483 + ompF b0929 0.34 +0.6
985,548 - ompF b0929 0.40 -0.9
985,548 - ompF b0929 0.40 -0.1
985,682 + ompF b0929 0.52 -0.1
985,682 + ompF b0929 0.52 -0.1
985,805 + ompF b0929 0.63 +0.4
985,813 - ompF b0929 0.64 -0.6
985,880 - ompF b0929 0.70 +0.1

Or see this region's nucleotide sequence