Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4882

Experiment: KB with Rotenone 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4880 and Psyr_4881 overlap by 2 nucleotidesPsyr_4881 and Psyr_4882 are separated by 61 nucleotidesPsyr_4882 and Psyr_4883 are separated by 40 nucleotidesPsyr_4883 and Psyr_4884 are separated by 2 nucleotidesPsyr_4884 and Psyr_4885 are separated by 99 nucleotides Psyr_4880: Psyr_4880 - conserved hypothetical protein, at 5,791,998 to 5,792,438 _4880 Psyr_4881: Psyr_4881 - RNA methyltransferase TrmH, group 2, at 5,792,437 to 5,792,892 _4881 Psyr_4882: Psyr_4882 - protein translocase subunit secB, at 5,792,954 to 5,793,442 _4882 Psyr_4883: Psyr_4883 - Glutaredoxin, at 5,793,483 to 5,793,734 _4883 Psyr_4884: Psyr_4884 - Rhodanese-like protein, at 5,793,737 to 5,794,150 _4884 Psyr_4885: Psyr_4885 - phosphoglycerate mutase, at 5,794,250 to 5,795,839 _4885 Position (kb) 5792 5793 5794Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5791.971 kb on + strandat 5791.999 kb on + strandat 5791.999 kb on + strandat 5792.000 kb on - strandat 5792.118 kb on + strand, within Psyr_4880at 5792.118 kb on + strand, within Psyr_4880at 5792.118 kb on + strand, within Psyr_4880at 5792.119 kb on - strand, within Psyr_4880at 5792.119 kb on - strand, within Psyr_4880at 5792.119 kb on - strand, within Psyr_4880at 5792.119 kb on - strand, within Psyr_4880at 5792.224 kb on + strand, within Psyr_4880at 5792.224 kb on + strand, within Psyr_4880at 5792.225 kb on - strand, within Psyr_4880at 5792.225 kb on - strand, within Psyr_4880at 5792.373 kb on + strand, within Psyr_4880at 5792.373 kb on + strand, within Psyr_4880at 5792.373 kb on + strand, within Psyr_4880at 5792.374 kb on - strand, within Psyr_4880at 5792.374 kb on - strand, within Psyr_4880at 5792.374 kb on - strand, within Psyr_4880at 5792.374 kb on - strand, within Psyr_4880at 5792.384 kb on + strand, within Psyr_4880at 5792.384 kb on + strand, within Psyr_4880at 5792.498 kb on + strand, within Psyr_4881at 5792.596 kb on + strand, within Psyr_4881at 5792.596 kb on + strand, within Psyr_4881at 5792.596 kb on + strand, within Psyr_4881at 5792.597 kb on - strand, within Psyr_4881at 5792.830 kb on - strand, within Psyr_4881at 5792.860 kb on + strandat 5792.860 kb on + strandat 5792.860 kb on + strandat 5792.860 kb on + strandat 5792.861 kb on - strandat 5792.891 kb on - strandat 5792.955 kb on + strandat 5792.956 kb on - strandat 5792.956 kb on - strandat 5793.062 kb on + strand, within Psyr_4882at 5793.062 kb on + strand, within Psyr_4882at 5793.094 kb on - strand, within Psyr_4882at 5793.173 kb on - strand, within Psyr_4882at 5793.243 kb on - strand, within Psyr_4882at 5793.253 kb on - strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.373 kb on + strand, within Psyr_4882at 5793.373 kb on + strand, within Psyr_4882at 5793.374 kb on - strand, within Psyr_4882at 5793.461 kb on + strandat 5793.462 kb on - strandat 5793.474 kb on + strandat 5793.585 kb on - strand, within Psyr_4883at 5793.687 kb on + strand, within Psyr_4883at 5793.687 kb on + strand, within Psyr_4883at 5793.687 kb on + strand, within Psyr_4883at 5793.687 kb on + strand, within Psyr_4883at 5793.687 kb on + strand, within Psyr_4883at 5793.687 kb on + strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.704 kb on - strand, within Psyr_4883at 5793.715 kb on + strandat 5793.863 kb on + strand, within Psyr_4884at 5793.864 kb on - strand, within Psyr_4884at 5793.885 kb on + strand, within Psyr_4884at 5793.885 kb on + strand, within Psyr_4884at 5793.885 kb on + strand, within Psyr_4884at 5793.885 kb on + strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884at 5793.914 kb on + strand, within Psyr_4884at 5793.915 kb on - strand, within Psyr_4884at 5793.915 kb on - strand, within Psyr_4884at 5793.915 kb on - strand, within Psyr_4884at 5793.963 kb on + strand, within Psyr_4884at 5793.964 kb on - strand, within Psyr_4884at 5794.113 kb on + strandat 5794.113 kb on + strandat 5794.113 kb on + strandat 5794.114 kb on - strandat 5794.114 kb on - strandat 5794.154 kb on + strandat 5794.154 kb on + strandat 5794.154 kb on + strandat 5794.155 kb on - strandat 5794.155 kb on - strandat 5794.155 kb on - strandat 5794.170 kb on - strandat 5794.184 kb on + strandat 5794.185 kb on - strandat 5794.185 kb on - strandat 5794.185 kb on - strandat 5794.186 kb on + strandat 5794.186 kb on + strandat 5794.186 kb on + strandat 5794.186 kb on + strandat 5794.186 kb on + strandat 5794.186 kb on + strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.216 kb on + strandat 5794.264 kb on + strandat 5794.264 kb on + strandat 5794.265 kb on - strandat 5794.306 kb on + strandat 5794.306 kb on + strandat 5794.307 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.25 mg/ml
remove
5,791,971 + +0.1
5,791,999 + +0.1
5,791,999 + +0.2
5,792,000 - -0.8
5,792,118 + Psyr_4880 0.27 +0.8
5,792,118 + Psyr_4880 0.27 -0.2
5,792,118 + Psyr_4880 0.27 -0.4
5,792,119 - Psyr_4880 0.27 -0.1
5,792,119 - Psyr_4880 0.27 +1.6
5,792,119 - Psyr_4880 0.27 -1.1
5,792,119 - Psyr_4880 0.27 -1.5
5,792,224 + Psyr_4880 0.51 +0.2
5,792,224 + Psyr_4880 0.51 +0.4
5,792,225 - Psyr_4880 0.51 +0.1
5,792,225 - Psyr_4880 0.51 +1.2
5,792,373 + Psyr_4880 0.85 -0.6
5,792,373 + Psyr_4880 0.85 -0.8
5,792,373 + Psyr_4880 0.85 +0.0
5,792,374 - Psyr_4880 0.85 +0.3
5,792,374 - Psyr_4880 0.85 -0.0
5,792,374 - Psyr_4880 0.85 +0.4
5,792,374 - Psyr_4880 0.85 -0.4
5,792,384 + Psyr_4880 0.88 -0.2
5,792,384 + Psyr_4880 0.88 +1.2
5,792,498 + Psyr_4881 0.13 +0.4
5,792,596 + Psyr_4881 0.35 -0.5
5,792,596 + Psyr_4881 0.35 -0.3
5,792,596 + Psyr_4881 0.35 -0.2
5,792,597 - Psyr_4881 0.35 -0.1
5,792,830 - Psyr_4881 0.86 +0.4
5,792,860 + +0.2
5,792,860 + -0.7
5,792,860 + +0.8
5,792,860 + -0.6
5,792,861 - -0.4
5,792,891 - -1.0
5,792,955 + +0.6
5,792,956 - -1.0
5,792,956 - -0.0
5,793,062 + Psyr_4882 0.22 -1.0
5,793,062 + Psyr_4882 0.22 -1.2
5,793,094 - Psyr_4882 0.29 -1.4
5,793,173 - Psyr_4882 0.45 +0.4
5,793,243 - Psyr_4882 0.59 -0.5
5,793,253 - Psyr_4882 0.61 -2.0
5,793,369 + Psyr_4882 0.85 +0.0
5,793,369 + Psyr_4882 0.85 -0.6
5,793,369 + Psyr_4882 0.85 -1.5
5,793,369 + Psyr_4882 0.85 -0.4
5,793,369 + Psyr_4882 0.85 -0.9
5,793,369 + Psyr_4882 0.85 -1.1
5,793,369 + Psyr_4882 0.85 -2.2
5,793,369 + Psyr_4882 0.85 -0.6
5,793,369 + Psyr_4882 0.85 -0.6
5,793,369 + Psyr_4882 0.85 -0.9
5,793,369 + Psyr_4882 0.85 -0.2
5,793,370 - Psyr_4882 0.85 +0.3
5,793,370 - Psyr_4882 0.85 +0.1
5,793,370 - Psyr_4882 0.85 -0.8
5,793,370 - Psyr_4882 0.85 -2.8
5,793,370 - Psyr_4882 0.85 -0.2
5,793,370 - Psyr_4882 0.85 -0.9
5,793,370 - Psyr_4882 0.85 -0.6
5,793,370 - Psyr_4882 0.85 -0.5
5,793,370 - Psyr_4882 0.85 -1.5
5,793,373 + Psyr_4882 0.86 -1.8
5,793,373 + Psyr_4882 0.86 -1.1
5,793,374 - Psyr_4882 0.86 -0.8
5,793,461 + -3.6
5,793,462 - +0.2
5,793,474 + -0.6
5,793,585 - Psyr_4883 0.40 +1.8
5,793,687 + Psyr_4883 0.81 -1.3
5,793,687 + Psyr_4883 0.81 -1.2
5,793,687 + Psyr_4883 0.81 +0.8
5,793,687 + Psyr_4883 0.81 -0.7
5,793,687 + Psyr_4883 0.81 -1.0
5,793,687 + Psyr_4883 0.81 -1.0
5,793,688 - Psyr_4883 0.81 -1.1
5,793,688 - Psyr_4883 0.81 +0.0
5,793,688 - Psyr_4883 0.81 -1.5
5,793,688 - Psyr_4883 0.81 -0.5
5,793,688 - Psyr_4883 0.81 +0.3
5,793,688 - Psyr_4883 0.81 -0.3
5,793,688 - Psyr_4883 0.81 +0.9
5,793,688 - Psyr_4883 0.81 -0.3
5,793,704 - Psyr_4883 0.88 -1.0
5,793,715 + -0.2
5,793,863 + Psyr_4884 0.30 -2.2
5,793,864 - Psyr_4884 0.31 -1.2
5,793,885 + Psyr_4884 0.36 +0.5
5,793,885 + Psyr_4884 0.36 -2.0
5,793,885 + Psyr_4884 0.36 -1.2
5,793,885 + Psyr_4884 0.36 -1.5
5,793,886 - Psyr_4884 0.36 -0.8
5,793,886 - Psyr_4884 0.36 -0.6
5,793,886 - Psyr_4884 0.36 +0.8
5,793,886 - Psyr_4884 0.36 -0.2
5,793,914 + Psyr_4884 0.43 -1.1
5,793,915 - Psyr_4884 0.43 -1.6
5,793,915 - Psyr_4884 0.43 -1.8
5,793,915 - Psyr_4884 0.43 -2.0
5,793,963 + Psyr_4884 0.55 -1.3
5,793,964 - Psyr_4884 0.55 +1.4
5,794,113 + -1.3
5,794,113 + +0.2
5,794,113 + -0.1
5,794,114 - -0.1
5,794,114 - +0.0
5,794,154 + -0.3
5,794,154 + -2.2
5,794,154 + -0.4
5,794,155 - -0.5
5,794,155 - +0.0
5,794,155 - +0.2
5,794,170 - -0.3
5,794,184 + -0.3
5,794,185 - +0.1
5,794,185 - -0.4
5,794,185 - -0.2
5,794,186 + -1.1
5,794,186 + +0.4
5,794,186 + +1.0
5,794,186 + -0.2
5,794,186 + -0.1
5,794,186 + -0.2
5,794,187 - +0.5
5,794,187 - +0.4
5,794,187 - -1.1
5,794,187 - -0.1
5,794,187 - -1.2
5,794,187 - +0.1
5,794,187 - +0.3
5,794,187 - +0.5
5,794,187 - -1.4
5,794,187 - +0.6
5,794,216 + +0.2
5,794,264 + +1.2
5,794,264 + -0.8
5,794,265 - -3.3
5,794,306 + -0.5
5,794,306 + -0.2
5,794,307 - +0.8

Or see this region's nucleotide sequence