Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4685

Experiment: KB with Rotenone 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4683 and Psyr_4684 are separated by 24 nucleotidesPsyr_4684 and Psyr_4685 overlap by 8 nucleotidesPsyr_4685 and Psyr_4686 overlap by 8 nucleotides Psyr_4683: Psyr_4683 - dethiobiotin synthase, at 5,551,356 to 5,552,036 _4683 Psyr_4684: Psyr_4684 - biotin synthesis protein BioC, at 5,552,061 to 5,552,870 _4684 Psyr_4685: Psyr_4685 - bioH protein, at 5,552,863 to 5,553,594 _4685 Psyr_4686: Psyr_4686 - 8-amino-7-oxononanoate synthase, at 5,553,587 to 5,554,777 _4686 Position (kb) 5552 5553 5554Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5552.023 kb on + strandat 5552.024 kb on - strandat 5552.024 kb on - strandat 5552.024 kb on - strandat 5552.095 kb on + strandat 5552.095 kb on + strandat 5552.096 kb on - strandat 5552.096 kb on - strandat 5552.096 kb on - strandat 5552.134 kb on + strandat 5552.392 kb on + strand, within Psyr_4684at 5552.427 kb on + strand, within Psyr_4684at 5552.630 kb on + strand, within Psyr_4684at 5552.631 kb on - strand, within Psyr_4684at 5552.631 kb on - strand, within Psyr_4684at 5552.631 kb on - strand, within Psyr_4684at 5552.631 kb on - strand, within Psyr_4684at 5552.631 kb on - strand, within Psyr_4684at 5552.782 kb on + strand, within Psyr_4684at 5552.782 kb on + strand, within Psyr_4684at 5552.782 kb on + strand, within Psyr_4684at 5552.783 kb on - strand, within Psyr_4684at 5553.059 kb on + strand, within Psyr_4685at 5553.659 kb on + strandat 5553.659 kb on + strandat 5553.659 kb on + strandat 5553.659 kb on + strandat 5553.833 kb on - strand, within Psyr_4686at 5553.987 kb on + strand, within Psyr_4686at 5553.987 kb on + strand, within Psyr_4686at 5553.987 kb on + strand, within Psyr_4686at 5553.987 kb on + strand, within Psyr_4686at 5553.988 kb on - strand, within Psyr_4686at 5553.988 kb on - strand, within Psyr_4686at 5553.988 kb on - strand, within Psyr_4686at 5553.988 kb on - strand, within Psyr_4686at 5553.988 kb on - strand, within Psyr_4686at 5553.988 kb on - strand, within Psyr_4686at 5553.988 kb on - strand, within Psyr_4686at 5553.993 kb on + strand, within Psyr_4686at 5553.993 kb on + strand, within Psyr_4686at 5553.994 kb on - strand, within Psyr_4686at 5553.994 kb on - strand, within Psyr_4686at 5553.994 kb on - strand, within Psyr_4686at 5554.458 kb on + strand, within Psyr_4686at 5554.459 kb on - strand, within Psyr_4686at 5554.459 kb on - strand, within Psyr_4686at 5554.459 kb on - strand, within Psyr_4686at 5554.459 kb on - strand, within Psyr_4686

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.25 mg/ml
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5,552,023 + +0.5
5,552,024 - -0.1
5,552,024 - -2.3
5,552,024 - -0.4
5,552,095 + -1.7
5,552,095 + -3.5
5,552,096 - -2.6
5,552,096 - -3.1
5,552,096 - -2.8
5,552,134 + -3.6
5,552,392 + Psyr_4684 0.41 -1.2
5,552,427 + Psyr_4684 0.45 -3.6
5,552,630 + Psyr_4684 0.70 -2.6
5,552,631 - Psyr_4684 0.70 -2.7
5,552,631 - Psyr_4684 0.70 -2.6
5,552,631 - Psyr_4684 0.70 -1.4
5,552,631 - Psyr_4684 0.70 -1.6
5,552,631 - Psyr_4684 0.70 -0.2
5,552,782 + Psyr_4684 0.89 -1.6
5,552,782 + Psyr_4684 0.89 -2.8
5,552,782 + Psyr_4684 0.89 -3.3
5,552,783 - Psyr_4684 0.89 -1.6
5,553,059 + Psyr_4685 0.27 -0.2
5,553,659 + -4.0
5,553,659 + -2.4
5,553,659 + -2.6
5,553,659 + -2.4
5,553,833 - Psyr_4686 0.21 -1.2
5,553,987 + Psyr_4686 0.34 -1.6
5,553,987 + Psyr_4686 0.34 -1.0
5,553,987 + Psyr_4686 0.34 -1.6
5,553,987 + Psyr_4686 0.34 -1.7
5,553,988 - Psyr_4686 0.34 -2.4
5,553,988 - Psyr_4686 0.34 -1.6
5,553,988 - Psyr_4686 0.34 -3.3
5,553,988 - Psyr_4686 0.34 -4.5
5,553,988 - Psyr_4686 0.34 -3.4
5,553,988 - Psyr_4686 0.34 -0.6
5,553,988 - Psyr_4686 0.34 -2.8
5,553,993 + Psyr_4686 0.34 -1.0
5,553,993 + Psyr_4686 0.34 -2.4
5,553,994 - Psyr_4686 0.34 -2.7
5,553,994 - Psyr_4686 0.34 -2.4
5,553,994 - Psyr_4686 0.34 -2.0
5,554,458 + Psyr_4686 0.73 -3.6
5,554,459 - Psyr_4686 0.73 -2.2
5,554,459 - Psyr_4686 0.73 -1.1
5,554,459 - Psyr_4686 0.73 -1.6
5,554,459 - Psyr_4686 0.73 -2.0

Or see this region's nucleotide sequence