Experiment: KB with Rotenone 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4631 and Psyr_4632 are separated by 120 nucleotides Psyr_4632 and Psyr_4633 overlap by 4 nucleotides
Psyr_4631: Psyr_4631 - PrkA serine kinase, at 5,490,446 to 5,492,368
_4631
Psyr_4632: Psyr_4632 - Protein of unknown function DUF444, at 5,492,489 to 5,493,760
_4632
Psyr_4633: Psyr_4633 - SpoVR, at 5,493,757 to 5,495,319
_4633
Position (kb) 5492
5493
5494 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5491.577 kb on + strand, within Psyr_4631 at 5491.577 kb on + strand, within Psyr_4631 at 5491.577 kb on + strand, within Psyr_4631 at 5491.577 kb on + strand, within Psyr_4631 at 5491.577 kb on + strand, within Psyr_4631 at 5491.577 kb on + strand, within Psyr_4631 at 5491.595 kb on + strand, within Psyr_4631 at 5491.595 kb on + strand, within Psyr_4631 at 5491.595 kb on + strand, within Psyr_4631 at 5491.596 kb on - strand, within Psyr_4631 at 5491.596 kb on - strand, within Psyr_4631 at 5491.649 kb on + strand, within Psyr_4631 at 5491.775 kb on + strand, within Psyr_4631 at 5491.775 kb on + strand, within Psyr_4631 at 5491.775 kb on + strand, within Psyr_4631 at 5491.776 kb on - strand, within Psyr_4631 at 5491.776 kb on - strand, within Psyr_4631 at 5491.832 kb on + strand, within Psyr_4631 at 5491.854 kb on - strand, within Psyr_4631 at 5491.854 kb on - strand, within Psyr_4631 at 5491.854 kb on - strand, within Psyr_4631 at 5491.854 kb on - strand, within Psyr_4631 at 5491.869 kb on - strand, within Psyr_4631 at 5491.904 kb on + strand, within Psyr_4631 at 5491.905 kb on - strand, within Psyr_4631 at 5491.926 kb on - strand, within Psyr_4631 at 5491.958 kb on + strand, within Psyr_4631 at 5491.958 kb on + strand, within Psyr_4631 at 5491.958 kb on + strand, within Psyr_4631 at 5491.959 kb on - strand, within Psyr_4631 at 5491.959 kb on - strand, within Psyr_4631 at 5491.959 kb on - strand, within Psyr_4631 at 5491.959 kb on - strand, within Psyr_4631 at 5491.988 kb on + strand, within Psyr_4631 at 5492.322 kb on + strand at 5492.322 kb on + strand at 5492.322 kb on + strand at 5492.323 kb on - strand at 5492.323 kb on - strand at 5492.323 kb on - strand at 5492.323 kb on - strand at 5492.323 kb on - strand at 5492.323 kb on - strand at 5492.323 kb on - strand at 5492.323 kb on - strand at 5492.323 kb on - strand at 5492.342 kb on + strand at 5492.366 kb on + strand at 5492.367 kb on - strand at 5492.390 kb on - strand at 5492.461 kb on + strand at 5492.461 kb on + strand at 5492.461 kb on + strand at 5492.461 kb on + strand at 5492.461 kb on + strand at 5492.462 kb on - strand at 5492.462 kb on - strand at 5492.462 kb on - strand at 5492.488 kb on + strand at 5492.488 kb on + strand at 5492.488 kb on + strand at 5492.489 kb on - strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.538 kb on + strand at 5492.840 kb on - strand, within Psyr_4632 at 5493.124 kb on - strand, within Psyr_4632 at 5493.165 kb on - strand, within Psyr_4632 at 5493.165 kb on - strand, within Psyr_4632 at 5493.188 kb on + strand, within Psyr_4632 at 5493.188 kb on + strand, within Psyr_4632 at 5493.188 kb on + strand, within Psyr_4632 at 5493.188 kb on + strand, within Psyr_4632 at 5493.188 kb on + strand, within Psyr_4632 at 5493.189 kb on - strand, within Psyr_4632 at 5493.189 kb on - strand, within Psyr_4632 at 5493.189 kb on - strand, within Psyr_4632 at 5493.311 kb on + strand, within Psyr_4632 at 5493.312 kb on - strand, within Psyr_4632 at 5493.312 kb on - strand, within Psyr_4632 at 5493.328 kb on + strand, within Psyr_4632 at 5493.328 kb on + strand, within Psyr_4632 at 5493.328 kb on + strand, within Psyr_4632 at 5493.329 kb on - strand, within Psyr_4632 at 5493.329 kb on - strand, within Psyr_4632 at 5493.329 kb on - strand, within Psyr_4632 at 5493.329 kb on - strand, within Psyr_4632 at 5493.332 kb on + strand, within Psyr_4632 at 5493.333 kb on - strand, within Psyr_4632 at 5493.333 kb on - strand, within Psyr_4632 at 5493.333 kb on - strand, within Psyr_4632 at 5493.496 kb on + strand, within Psyr_4632 at 5493.497 kb on - strand, within Psyr_4632 at 5493.497 kb on - strand, within Psyr_4632 at 5493.497 kb on - strand, within Psyr_4632 at 5493.500 kb on + strand, within Psyr_4632 at 5493.593 kb on + strand, within Psyr_4632 at 5493.593 kb on + strand, within Psyr_4632 at 5493.593 kb on + strand, within Psyr_4632 at 5493.593 kb on + strand, within Psyr_4632 at 5493.594 kb on - strand, within Psyr_4632 at 5493.594 kb on - strand, within Psyr_4632 at 5493.594 kb on - strand, within Psyr_4632 at 5493.596 kb on + strand, within Psyr_4632 at 5493.597 kb on - strand, within Psyr_4632 at 5493.597 kb on - strand, within Psyr_4632 at 5493.602 kb on + strand, within Psyr_4632 at 5493.602 kb on + strand, within Psyr_4632 at 5493.602 kb on + strand, within Psyr_4632 at 5493.602 kb on + strand, within Psyr_4632 at 5493.602 kb on + strand, within Psyr_4632 at 5493.602 kb on + strand, within Psyr_4632 at 5493.602 kb on + strand, within Psyr_4632 at 5493.603 kb on - strand, within Psyr_4632 at 5493.603 kb on - strand, within Psyr_4632 at 5493.603 kb on - strand, within Psyr_4632 at 5493.641 kb on + strand at 5493.647 kb on + strand at 5493.647 kb on + strand at 5493.648 kb on - strand at 5493.648 kb on - strand at 5493.648 kb on - strand at 5493.712 kb on + strand at 5493.712 kb on + strand at 5493.712 kb on + strand at 5493.713 kb on - strand at 5493.829 kb on + strand at 5493.862 kb on + strand at 5493.877 kb on + strand at 5493.878 kb on - strand at 5493.878 kb on - strand at 5493.926 kb on - strand, within Psyr_4633 at 5493.926 kb on - strand, within Psyr_4633 at 5493.926 kb on - strand, within Psyr_4633 at 5494.027 kb on + strand, within Psyr_4633 at 5494.120 kb on + strand, within Psyr_4633 at 5494.150 kb on + strand, within Psyr_4633 at 5494.150 kb on + strand, within Psyr_4633 at 5494.150 kb on + strand, within Psyr_4633 at 5494.150 kb on + strand, within Psyr_4633 at 5494.150 kb on + strand, within Psyr_4633 at 5494.151 kb on - strand, within Psyr_4633 at 5494.151 kb on - strand, within Psyr_4633 at 5494.192 kb on + strand, within Psyr_4633 at 5494.193 kb on - strand, within Psyr_4633 at 5494.213 kb on + strand, within Psyr_4633 at 5494.213 kb on + strand, within Psyr_4633 at 5494.213 kb on + strand, within Psyr_4633 at 5494.213 kb on + strand, within Psyr_4633 at 5494.213 kb on + strand, within Psyr_4633 at 5494.213 kb on + strand, within Psyr_4633 at 5494.213 kb on + strand, within Psyr_4633 at 5494.213 kb on + strand, within Psyr_4633 at 5494.213 kb on + strand, within Psyr_4633 at 5494.213 kb on + strand, within Psyr_4633 at 5494.213 kb on + strand, within Psyr_4633 at 5494.213 kb on + strand, within Psyr_4633 at 5494.213 kb on + strand, within Psyr_4633 at 5494.213 kb on + strand, within Psyr_4633 at 5494.214 kb on - strand, within Psyr_4633 at 5494.214 kb on - strand, within Psyr_4633 at 5494.214 kb on - strand, within Psyr_4633 at 5494.214 kb on - strand, within Psyr_4633 at 5494.291 kb on + strand, within Psyr_4633 at 5494.291 kb on + strand, within Psyr_4633 at 5494.306 kb on + strand, within Psyr_4633 at 5494.306 kb on + strand, within Psyr_4633 at 5494.480 kb on + strand, within Psyr_4633 at 5494.480 kb on + strand, within Psyr_4633 at 5494.481 kb on - strand, within Psyr_4633 at 5494.481 kb on - strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.564 kb on + strand, within Psyr_4633 at 5494.564 kb on + strand, within Psyr_4633 at 5494.565 kb on - strand, within Psyr_4633 at 5494.618 kb on + strand, within Psyr_4633 at 5494.619 kb on - strand, within Psyr_4633 at 5494.639 kb on + strand, within Psyr_4633 at 5494.639 kb on + strand, within Psyr_4633 at 5494.639 kb on + strand, within Psyr_4633 at 5494.730 kb on - strand, within Psyr_4633 at 5494.732 kb on + strand, within Psyr_4633
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rotenone 0.25 mg/ml remove 5,491,577 + Psyr_4631 0.59 -0.0 5,491,577 + Psyr_4631 0.59 -0.0 5,491,577 + Psyr_4631 0.59 +0.4 5,491,577 + Psyr_4631 0.59 +0.4 5,491,577 + Psyr_4631 0.59 +0.5 5,491,577 + Psyr_4631 0.59 -0.5 5,491,595 + Psyr_4631 0.60 -0.0 5,491,595 + Psyr_4631 0.60 +0.4 5,491,595 + Psyr_4631 0.60 +0.5 5,491,596 - Psyr_4631 0.60 -0.6 5,491,596 - Psyr_4631 0.60 -0.5 5,491,649 + Psyr_4631 0.63 -0.3 5,491,775 + Psyr_4631 0.69 -0.2 5,491,775 + Psyr_4631 0.69 -0.2 5,491,775 + Psyr_4631 0.69 -0.7 5,491,776 - Psyr_4631 0.69 -1.1 5,491,776 - Psyr_4631 0.69 +0.7 5,491,832 + Psyr_4631 0.72 +0.1 5,491,854 - Psyr_4631 0.73 +0.9 5,491,854 - Psyr_4631 0.73 +0.8 5,491,854 - Psyr_4631 0.73 -0.7 5,491,854 - Psyr_4631 0.73 +0.6 5,491,869 - Psyr_4631 0.74 -1.1 5,491,904 + Psyr_4631 0.76 +0.7 5,491,905 - Psyr_4631 0.76 +0.3 5,491,926 - Psyr_4631 0.77 +1.7 5,491,958 + Psyr_4631 0.79 -0.3 5,491,958 + Psyr_4631 0.79 +1.7 5,491,958 + Psyr_4631 0.79 +1.4 5,491,959 - Psyr_4631 0.79 +0.7 5,491,959 - Psyr_4631 0.79 -0.3 5,491,959 - Psyr_4631 0.79 +0.2 5,491,959 - Psyr_4631 0.79 -0.4 5,491,988 + Psyr_4631 0.80 +1.0 5,492,322 + -0.5 5,492,322 + +0.5 5,492,322 + +1.6 5,492,323 - +0.8 5,492,323 - -0.6 5,492,323 - +1.0 5,492,323 - -0.0 5,492,323 - -1.4 5,492,323 - +1.2 5,492,323 - +0.2 5,492,323 - -0.5 5,492,323 - -0.5 5,492,342 + +0.7 5,492,366 + +0.3 5,492,367 - -0.5 5,492,390 - +1.1 5,492,461 + +0.4 5,492,461 + +0.3 5,492,461 + -0.9 5,492,461 + +0.0 5,492,461 + +0.8 5,492,462 - -0.3 5,492,462 - +0.4 5,492,462 - -0.0 5,492,488 + +0.2 5,492,488 + +0.8 5,492,488 + +0.3 5,492,489 - -0.3 5,492,495 + -1.2 5,492,495 + +0.9 5,492,495 + +1.4 5,492,495 + +0.5 5,492,495 + +0.8 5,492,495 + -0.6 5,492,495 + -1.3 5,492,495 + +0.1 5,492,495 + +0.5 5,492,495 + -1.1 5,492,495 + -0.7 5,492,495 + +0.1 5,492,496 - -0.1 5,492,496 - +0.1 5,492,496 - -0.1 5,492,496 - +0.7 5,492,496 - -0.0 5,492,496 - +1.7 5,492,496 - +0.4 5,492,496 - +0.5 5,492,496 - -0.6 5,492,496 - +1.3 5,492,496 - +0.7 5,492,496 - -0.7 5,492,496 - +0.2 5,492,496 - -0.6 5,492,496 - -0.3 5,492,496 - -0.1 5,492,496 - +0.1 5,492,496 - +0.7 5,492,538 + -0.3 5,492,840 - Psyr_4632 0.28 +0.3 5,493,124 - Psyr_4632 0.50 +1.2 5,493,165 - Psyr_4632 0.53 +0.1 5,493,165 - Psyr_4632 0.53 -1.5 5,493,188 + Psyr_4632 0.55 +0.5 5,493,188 + Psyr_4632 0.55 +1.0 5,493,188 + Psyr_4632 0.55 +0.8 5,493,188 + Psyr_4632 0.55 +0.6 5,493,188 + Psyr_4632 0.55 +0.7 5,493,189 - Psyr_4632 0.55 +0.3 5,493,189 - Psyr_4632 0.55 +0.2 5,493,189 - Psyr_4632 0.55 +0.5 5,493,311 + Psyr_4632 0.65 +2.3 5,493,312 - Psyr_4632 0.65 +0.8 5,493,312 - Psyr_4632 0.65 +0.2 5,493,328 + Psyr_4632 0.66 -0.3 5,493,328 + Psyr_4632 0.66 +0.3 5,493,328 + Psyr_4632 0.66 -0.9 5,493,329 - Psyr_4632 0.66 +0.3 5,493,329 - Psyr_4632 0.66 +0.4 5,493,329 - Psyr_4632 0.66 +1.7 5,493,329 - Psyr_4632 0.66 +0.9 5,493,332 + Psyr_4632 0.66 +0.4 5,493,333 - Psyr_4632 0.66 +0.1 5,493,333 - Psyr_4632 0.66 -1.2 5,493,333 - Psyr_4632 0.66 +0.3 5,493,496 + Psyr_4632 0.79 +1.3 5,493,497 - Psyr_4632 0.79 +1.7 5,493,497 - Psyr_4632 0.79 +0.3 5,493,497 - Psyr_4632 0.79 -0.5 5,493,500 + Psyr_4632 0.79 +1.4 5,493,593 + Psyr_4632 0.87 +0.3 5,493,593 + Psyr_4632 0.87 +0.8 5,493,593 + Psyr_4632 0.87 +0.4 5,493,593 + Psyr_4632 0.87 -1.0 5,493,594 - Psyr_4632 0.87 +0.1 5,493,594 - Psyr_4632 0.87 +0.2 5,493,594 - Psyr_4632 0.87 -0.6 5,493,596 + Psyr_4632 0.87 +0.1 5,493,597 - Psyr_4632 0.87 +0.7 5,493,597 - Psyr_4632 0.87 +0.2 5,493,602 + Psyr_4632 0.88 +1.1 5,493,602 + Psyr_4632 0.88 +1.7 5,493,602 + Psyr_4632 0.88 -0.9 5,493,602 + Psyr_4632 0.88 +0.9 5,493,602 + Psyr_4632 0.88 +0.3 5,493,602 + Psyr_4632 0.88 +1.8 5,493,602 + Psyr_4632 0.88 +1.6 5,493,603 - Psyr_4632 0.88 -0.1 5,493,603 - Psyr_4632 0.88 -0.2 5,493,603 - Psyr_4632 0.88 +0.1 5,493,641 + +0.6 5,493,647 + +0.4 5,493,647 + +0.0 5,493,648 - -0.2 5,493,648 - +0.1 5,493,648 - -0.1 5,493,712 + +1.0 5,493,712 + +0.1 5,493,712 + +1.7 5,493,713 - -0.5 5,493,829 + +0.0 5,493,862 + +0.4 5,493,877 + -1.3 5,493,878 - +0.1 5,493,878 - -0.6 5,493,926 - Psyr_4633 0.11 +1.5 5,493,926 - Psyr_4633 0.11 -1.8 5,493,926 - Psyr_4633 0.11 -0.3 5,494,027 + Psyr_4633 0.17 -0.6 5,494,120 + Psyr_4633 0.23 -0.8 5,494,150 + Psyr_4633 0.25 -0.3 5,494,150 + Psyr_4633 0.25 -1.8 5,494,150 + Psyr_4633 0.25 -0.1 5,494,150 + Psyr_4633 0.25 -0.5 5,494,150 + Psyr_4633 0.25 -0.1 5,494,151 - Psyr_4633 0.25 +0.1 5,494,151 - Psyr_4633 0.25 +1.3 5,494,192 + Psyr_4633 0.28 -0.4 5,494,193 - Psyr_4633 0.28 +0.7 5,494,213 + Psyr_4633 0.29 +0.1 5,494,213 + Psyr_4633 0.29 -0.2 5,494,213 + Psyr_4633 0.29 +1.0 5,494,213 + Psyr_4633 0.29 -0.4 5,494,213 + Psyr_4633 0.29 -0.6 5,494,213 + Psyr_4633 0.29 +0.3 5,494,213 + Psyr_4633 0.29 -1.3 5,494,213 + Psyr_4633 0.29 -0.4 5,494,213 + Psyr_4633 0.29 -0.8 5,494,213 + Psyr_4633 0.29 -0.2 5,494,213 + Psyr_4633 0.29 +0.7 5,494,213 + Psyr_4633 0.29 -0.8 5,494,213 + Psyr_4633 0.29 -0.4 5,494,213 + Psyr_4633 0.29 +1.7 5,494,214 - Psyr_4633 0.29 -2.1 5,494,214 - Psyr_4633 0.29 +0.9 5,494,214 - Psyr_4633 0.29 +0.1 5,494,214 - Psyr_4633 0.29 -0.5 5,494,291 + Psyr_4633 0.34 +0.5 5,494,291 + Psyr_4633 0.34 -0.7 5,494,306 + Psyr_4633 0.35 -0.1 5,494,306 + Psyr_4633 0.35 +1.1 5,494,480 + Psyr_4633 0.46 -0.4 5,494,480 + Psyr_4633 0.46 -0.9 5,494,481 - Psyr_4633 0.46 -0.2 5,494,481 - Psyr_4633 0.46 -1.4 5,494,558 + Psyr_4633 0.51 +0.5 5,494,558 + Psyr_4633 0.51 +0.9 5,494,558 + Psyr_4633 0.51 -1.0 5,494,558 + Psyr_4633 0.51 -0.3 5,494,558 + Psyr_4633 0.51 +1.0 5,494,558 + Psyr_4633 0.51 +0.1 5,494,558 + Psyr_4633 0.51 +0.7 5,494,564 + Psyr_4633 0.52 -0.3 5,494,564 + Psyr_4633 0.52 -0.8 5,494,565 - Psyr_4633 0.52 +1.3 5,494,618 + Psyr_4633 0.55 -0.3 5,494,619 - Psyr_4633 0.55 +1.9 5,494,639 + Psyr_4633 0.56 +0.8 5,494,639 + Psyr_4633 0.56 +0.0 5,494,639 + Psyr_4633 0.56 +0.7 5,494,730 - Psyr_4633 0.62 -0.3 5,494,732 + Psyr_4633 0.62 -0.1
Or see this region's nucleotide sequence