Experiment: KB with Rotenone 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4373 and Psyr_4374 are separated by 46 nucleotides Psyr_4374 and Psyr_4375 are separated by 74 nucleotides Psyr_4375 and Psyr_4376 are separated by 178 nucleotides
Psyr_4373: Psyr_4373 - PAS, at 5,227,798 to 5,230,521
_4373
Psyr_4374: Psyr_4374 - conserved hypothetical protein, at 5,230,568 to 5,231,023
_4374
Psyr_4375: Psyr_4375 - Peptidase A24A, prepilin type IV, at 5,231,098 to 5,231,568
_4375
Psyr_4376: Psyr_4376 - regulatory protein, LuxR:Response regulator receiver, at 5,231,747 to 5,232,544
_4376
Position (kb) 5230
5231
5232 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5229.672 kb on + strand, within Psyr_4373 at 5229.673 kb on - strand, within Psyr_4373 at 5229.673 kb on - strand, within Psyr_4373 at 5229.773 kb on + strand, within Psyr_4373 at 5229.773 kb on + strand, within Psyr_4373 at 5229.774 kb on - strand, within Psyr_4373 at 5229.774 kb on - strand, within Psyr_4373 at 5229.853 kb on - strand, within Psyr_4373 at 5229.973 kb on - strand, within Psyr_4373 at 5229.983 kb on + strand, within Psyr_4373 at 5229.983 kb on + strand, within Psyr_4373 at 5229.984 kb on - strand, within Psyr_4373 at 5229.984 kb on - strand, within Psyr_4373 at 5229.984 kb on - strand, within Psyr_4373 at 5229.992 kb on + strand, within Psyr_4373 at 5230.439 kb on - strand at 5230.439 kb on - strand at 5230.439 kb on - strand at 5230.466 kb on + strand at 5230.466 kb on + strand at 5230.467 kb on - strand at 5230.658 kb on + strand, within Psyr_4374 at 5230.659 kb on - strand, within Psyr_4374 at 5230.714 kb on + strand, within Psyr_4374 at 5230.714 kb on + strand, within Psyr_4374 at 5230.714 kb on + strand, within Psyr_4374 at 5230.714 kb on + strand, within Psyr_4374 at 5230.715 kb on - strand, within Psyr_4374 at 5230.715 kb on - strand, within Psyr_4374 at 5230.716 kb on + strand, within Psyr_4374 at 5230.716 kb on + strand, within Psyr_4374 at 5230.716 kb on + strand, within Psyr_4374 at 5230.716 kb on + strand, within Psyr_4374 at 5230.716 kb on + strand, within Psyr_4374 at 5230.717 kb on - strand, within Psyr_4374 at 5230.717 kb on - strand, within Psyr_4374 at 5230.717 kb on - strand, within Psyr_4374 at 5230.717 kb on - strand, within Psyr_4374 at 5230.717 kb on - strand, within Psyr_4374 at 5230.729 kb on + strand, within Psyr_4374 at 5230.730 kb on - strand, within Psyr_4374 at 5230.730 kb on - strand, within Psyr_4374 at 5230.818 kb on + strand, within Psyr_4374 at 5230.819 kb on - strand, within Psyr_4374 at 5230.825 kb on + strand, within Psyr_4374 at 5230.826 kb on - strand, within Psyr_4374 at 5230.826 kb on - strand, within Psyr_4374 at 5230.909 kb on + strand, within Psyr_4374 at 5230.909 kb on + strand, within Psyr_4374 at 5230.909 kb on + strand, within Psyr_4374 at 5230.910 kb on - strand, within Psyr_4374 at 5230.910 kb on - strand, within Psyr_4374 at 5230.911 kb on + strand, within Psyr_4374 at 5230.912 kb on - strand, within Psyr_4374 at 5230.912 kb on - strand, within Psyr_4374 at 5230.912 kb on - strand, within Psyr_4374 at 5230.912 kb on - strand, within Psyr_4374 at 5230.912 kb on - strand, within Psyr_4374 at 5230.912 kb on - strand, within Psyr_4374 at 5230.945 kb on + strand, within Psyr_4374 at 5231.045 kb on + strand at 5231.045 kb on + strand at 5231.045 kb on + strand at 5231.045 kb on + strand at 5231.045 kb on + strand at 5231.045 kb on + strand at 5231.045 kb on + strand at 5231.045 kb on + strand at 5231.046 kb on - strand at 5231.046 kb on - strand at 5231.046 kb on - strand at 5231.046 kb on - strand at 5231.046 kb on - strand at 5231.046 kb on - strand at 5231.046 kb on - strand at 5231.046 kb on - strand at 5231.046 kb on - strand at 5231.046 kb on - strand at 5231.046 kb on - strand at 5231.046 kb on - strand at 5231.063 kb on + strand at 5231.063 kb on + strand at 5231.063 kb on + strand at 5231.063 kb on + strand at 5231.063 kb on + strand at 5231.063 kb on + strand at 5231.063 kb on + strand at 5231.063 kb on + strand at 5231.064 kb on - strand at 5231.064 kb on - strand at 5231.064 kb on - strand at 5231.205 kb on + strand, within Psyr_4375 at 5231.205 kb on + strand, within Psyr_4375 at 5231.206 kb on - strand, within Psyr_4375 at 5231.206 kb on - strand, within Psyr_4375 at 5231.209 kb on + strand, within Psyr_4375 at 5231.209 kb on + strand, within Psyr_4375 at 5231.374 kb on + strand, within Psyr_4375 at 5231.374 kb on + strand, within Psyr_4375 at 5231.375 kb on - strand, within Psyr_4375 at 5231.385 kb on + strand, within Psyr_4375 at 5231.386 kb on - strand, within Psyr_4375 at 5231.386 kb on - strand, within Psyr_4375 at 5231.386 kb on - strand, within Psyr_4375 at 5231.482 kb on + strand, within Psyr_4375 at 5231.484 kb on + strand, within Psyr_4375 at 5231.484 kb on + strand, within Psyr_4375 at 5231.484 kb on + strand, within Psyr_4375 at 5231.484 kb on + strand, within Psyr_4375 at 5231.484 kb on + strand, within Psyr_4375 at 5231.485 kb on - strand, within Psyr_4375 at 5231.485 kb on - strand, within Psyr_4375 at 5231.485 kb on - strand, within Psyr_4375 at 5231.506 kb on - strand, within Psyr_4375 at 5231.598 kb on + strand at 5231.598 kb on + strand at 5231.598 kb on + strand at 5231.598 kb on + strand at 5231.599 kb on - strand at 5231.599 kb on - strand at 5231.599 kb on - strand at 5231.602 kb on + strand at 5231.602 kb on + strand at 5231.603 kb on - strand at 5231.603 kb on - strand at 5231.603 kb on - strand at 5231.603 kb on - strand at 5231.607 kb on - strand at 5231.607 kb on - strand at 5231.624 kb on - strand at 5231.629 kb on + strand at 5231.629 kb on + strand at 5231.647 kb on + strand at 5231.647 kb on + strand at 5231.647 kb on + strand at 5231.647 kb on + strand at 5231.648 kb on - strand at 5231.648 kb on - strand at 5231.648 kb on - strand at 5231.648 kb on - strand at 5231.775 kb on + strand at 5231.776 kb on - strand at 5231.798 kb on - strand at 5231.910 kb on + strand, within Psyr_4376 at 5231.910 kb on + strand, within Psyr_4376 at 5231.910 kb on + strand, within Psyr_4376 at 5231.910 kb on + strand, within Psyr_4376 at 5231.911 kb on - strand, within Psyr_4376 at 5231.911 kb on - strand, within Psyr_4376
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rotenone 0.25 mg/ml remove 5,229,672 + Psyr_4373 0.69 -1.0 5,229,673 - Psyr_4373 0.69 +0.3 5,229,673 - Psyr_4373 0.69 +0.7 5,229,773 + Psyr_4373 0.73 +0.7 5,229,773 + Psyr_4373 0.73 +0.4 5,229,774 - Psyr_4373 0.73 -0.3 5,229,774 - Psyr_4373 0.73 +0.0 5,229,853 - Psyr_4373 0.75 +0.2 5,229,973 - Psyr_4373 0.80 -0.5 5,229,983 + Psyr_4373 0.80 -1.0 5,229,983 + Psyr_4373 0.80 +0.2 5,229,984 - Psyr_4373 0.80 +0.3 5,229,984 - Psyr_4373 0.80 -0.3 5,229,984 - Psyr_4373 0.80 -0.5 5,229,992 + Psyr_4373 0.81 +0.8 5,230,439 - -0.8 5,230,439 - -0.2 5,230,439 - -0.4 5,230,466 + -0.1 5,230,466 + +0.4 5,230,467 - +0.2 5,230,658 + Psyr_4374 0.20 +0.6 5,230,659 - Psyr_4374 0.20 +0.1 5,230,714 + Psyr_4374 0.32 +0.4 5,230,714 + Psyr_4374 0.32 +0.1 5,230,714 + Psyr_4374 0.32 +0.3 5,230,714 + Psyr_4374 0.32 +1.2 5,230,715 - Psyr_4374 0.32 -0.3 5,230,715 - Psyr_4374 0.32 -0.6 5,230,716 + Psyr_4374 0.32 -0.3 5,230,716 + Psyr_4374 0.32 -0.1 5,230,716 + Psyr_4374 0.32 -0.0 5,230,716 + Psyr_4374 0.32 +0.8 5,230,716 + Psyr_4374 0.32 +0.0 5,230,717 - Psyr_4374 0.33 +1.2 5,230,717 - Psyr_4374 0.33 -1.1 5,230,717 - Psyr_4374 0.33 -0.0 5,230,717 - Psyr_4374 0.33 +0.7 5,230,717 - Psyr_4374 0.33 -0.7 5,230,729 + Psyr_4374 0.35 -0.9 5,230,730 - Psyr_4374 0.36 -1.0 5,230,730 - Psyr_4374 0.36 +1.0 5,230,818 + Psyr_4374 0.55 +0.4 5,230,819 - Psyr_4374 0.55 +0.4 5,230,825 + Psyr_4374 0.56 -1.3 5,230,826 - Psyr_4374 0.57 -0.8 5,230,826 - Psyr_4374 0.57 -1.8 5,230,909 + Psyr_4374 0.75 -0.3 5,230,909 + Psyr_4374 0.75 +0.0 5,230,909 + Psyr_4374 0.75 +1.2 5,230,910 - Psyr_4374 0.75 +0.2 5,230,910 - Psyr_4374 0.75 -0.3 5,230,911 + Psyr_4374 0.75 -0.7 5,230,912 - Psyr_4374 0.75 +0.1 5,230,912 - Psyr_4374 0.75 +0.3 5,230,912 - Psyr_4374 0.75 +0.5 5,230,912 - Psyr_4374 0.75 -0.1 5,230,912 - Psyr_4374 0.75 +1.5 5,230,912 - Psyr_4374 0.75 -0.0 5,230,945 + Psyr_4374 0.83 +0.0 5,231,045 + -0.2 5,231,045 + -0.4 5,231,045 + +0.0 5,231,045 + +0.3 5,231,045 + -0.3 5,231,045 + +0.5 5,231,045 + -0.8 5,231,045 + +0.2 5,231,046 - -1.7 5,231,046 - +0.3 5,231,046 - +0.2 5,231,046 - +1.2 5,231,046 - +0.7 5,231,046 - +1.4 5,231,046 - +0.2 5,231,046 - -1.3 5,231,046 - -1.0 5,231,046 - +1.1 5,231,046 - +0.3 5,231,046 - -0.3 5,231,063 + -0.8 5,231,063 + +0.5 5,231,063 + -0.3 5,231,063 + +0.3 5,231,063 + -0.7 5,231,063 + -0.1 5,231,063 + -0.2 5,231,063 + +0.1 5,231,064 - +0.1 5,231,064 - -0.2 5,231,064 - +1.3 5,231,205 + Psyr_4375 0.23 +0.7 5,231,205 + Psyr_4375 0.23 -0.5 5,231,206 - Psyr_4375 0.23 +0.3 5,231,206 - Psyr_4375 0.23 -0.4 5,231,209 + Psyr_4375 0.24 -2.2 5,231,209 + Psyr_4375 0.24 +0.1 5,231,374 + Psyr_4375 0.59 +1.7 5,231,374 + Psyr_4375 0.59 -0.8 5,231,375 - Psyr_4375 0.59 -1.0 5,231,385 + Psyr_4375 0.61 -1.0 5,231,386 - Psyr_4375 0.61 +0.0 5,231,386 - Psyr_4375 0.61 -0.4 5,231,386 - Psyr_4375 0.61 +0.1 5,231,482 + Psyr_4375 0.82 +2.2 5,231,484 + Psyr_4375 0.82 -0.8 5,231,484 + Psyr_4375 0.82 -0.1 5,231,484 + Psyr_4375 0.82 -1.4 5,231,484 + Psyr_4375 0.82 -0.7 5,231,484 + Psyr_4375 0.82 -0.3 5,231,485 - Psyr_4375 0.82 -0.5 5,231,485 - Psyr_4375 0.82 -0.5 5,231,485 - Psyr_4375 0.82 -0.3 5,231,506 - Psyr_4375 0.87 -1.2 5,231,598 + -0.3 5,231,598 + -1.5 5,231,598 + -0.6 5,231,598 + +0.6 5,231,599 - -1.9 5,231,599 - +0.5 5,231,599 - -0.2 5,231,602 + +0.9 5,231,602 + -0.0 5,231,603 - +0.4 5,231,603 - +1.2 5,231,603 - +0.3 5,231,603 - -0.3 5,231,607 - -0.3 5,231,607 - +1.0 5,231,624 - +0.1 5,231,629 + -1.4 5,231,629 + -1.2 5,231,647 + -0.8 5,231,647 + -0.6 5,231,647 + -3.3 5,231,647 + -0.8 5,231,648 - -0.7 5,231,648 - +0.4 5,231,648 - +1.1 5,231,648 - +0.2 5,231,775 + -0.9 5,231,776 - +0.2 5,231,798 - -0.6 5,231,910 + Psyr_4376 0.20 +0.0 5,231,910 + Psyr_4376 0.20 +0.5 5,231,910 + Psyr_4376 0.20 +0.2 5,231,910 + Psyr_4376 0.20 +0.5 5,231,911 - Psyr_4376 0.21 -0.2 5,231,911 - Psyr_4376 0.21 -1.2
Or see this region's nucleotide sequence