Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4024

Experiment: KB with Rotenone 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4023 and Psyr_4024 overlap by 4 nucleotidesPsyr_4024 and Psyr_4025 overlap by 4 nucleotides Psyr_4023: Psyr_4023 - conserved hypothetical protein, at 4,790,447 to 4,792,036 _4023 Psyr_4024: Psyr_4024 - conserved hypothetical protein, at 4,792,033 to 4,793,250 _4024 Psyr_4025: Psyr_4025 - ATPase, at 4,793,247 to 4,794,287 _4025 Position (kb) 4792 4793 4794Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4791.062 kb on + strand, within Psyr_4023at 4791.062 kb on + strand, within Psyr_4023at 4791.062 kb on + strand, within Psyr_4023at 4791.062 kb on + strand, within Psyr_4023at 4791.062 kb on + strand, within Psyr_4023at 4791.062 kb on + strand, within Psyr_4023at 4791.062 kb on + strand, within Psyr_4023at 4791.063 kb on - strand, within Psyr_4023at 4791.063 kb on - strand, within Psyr_4023at 4791.063 kb on - strand, within Psyr_4023at 4791.063 kb on - strand, within Psyr_4023at 4791.063 kb on - strand, within Psyr_4023at 4791.078 kb on + strand, within Psyr_4023at 4791.078 kb on + strand, within Psyr_4023at 4791.079 kb on - strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.093 kb on + strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.094 kb on - strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.095 kb on + strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.096 kb on - strand, within Psyr_4023at 4791.120 kb on - strand, within Psyr_4023at 4791.120 kb on - strand, within Psyr_4023at 4791.120 kb on - strand, within Psyr_4023at 4791.156 kb on + strand, within Psyr_4023at 4791.156 kb on + strand, within Psyr_4023at 4791.156 kb on + strand, within Psyr_4023at 4791.156 kb on + strand, within Psyr_4023at 4791.156 kb on + strand, within Psyr_4023at 4791.156 kb on + strand, within Psyr_4023at 4791.156 kb on + strand, within Psyr_4023at 4791.156 kb on + strand, within Psyr_4023at 4791.156 kb on + strand, within Psyr_4023at 4791.156 kb on + strand, within Psyr_4023at 4791.157 kb on - strand, within Psyr_4023at 4791.157 kb on - strand, within Psyr_4023at 4791.157 kb on - strand, within Psyr_4023at 4791.157 kb on - strand, within Psyr_4023at 4791.157 kb on - strand, within Psyr_4023at 4791.157 kb on - strand, within Psyr_4023at 4791.157 kb on - strand, within Psyr_4023at 4791.157 kb on - strand, within Psyr_4023at 4791.157 kb on - strand, within Psyr_4023at 4791.204 kb on - strand, within Psyr_4023at 4791.210 kb on + strand, within Psyr_4023at 4791.232 kb on - strand, within Psyr_4023at 4791.232 kb on - strand, within Psyr_4023at 4791.232 kb on - strand, within Psyr_4023at 4791.276 kb on - strand, within Psyr_4023at 4791.567 kb on + strand, within Psyr_4023at 4791.567 kb on + strand, within Psyr_4023at 4791.567 kb on + strand, within Psyr_4023at 4791.567 kb on + strand, within Psyr_4023at 4791.567 kb on + strand, within Psyr_4023at 4791.568 kb on - strand, within Psyr_4023at 4791.568 kb on - strand, within Psyr_4023at 4791.568 kb on - strand, within Psyr_4023at 4791.568 kb on - strand, within Psyr_4023at 4791.868 kb on - strand, within Psyr_4023at 4792.438 kb on + strand, within Psyr_4024at 4792.438 kb on + strand, within Psyr_4024at 4792.438 kb on + strand, within Psyr_4024at 4792.439 kb on - strand, within Psyr_4024at 4792.538 kb on + strand, within Psyr_4024at 4792.539 kb on - strand, within Psyr_4024at 4792.539 kb on - strand, within Psyr_4024at 4792.591 kb on + strand, within Psyr_4024at 4792.591 kb on + strand, within Psyr_4024at 4792.591 kb on + strand, within Psyr_4024at 4792.591 kb on + strand, within Psyr_4024at 4792.591 kb on + strand, within Psyr_4024at 4792.592 kb on - strand, within Psyr_4024at 4792.592 kb on - strand, within Psyr_4024at 4792.592 kb on - strand, within Psyr_4024at 4792.685 kb on + strand, within Psyr_4024at 4792.756 kb on + strand, within Psyr_4024at 4792.757 kb on - strand, within Psyr_4024at 4792.858 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.247 kb on - strandat 4793.584 kb on - strand, within Psyr_4025at 4793.799 kb on + strand, within Psyr_4025at 4793.799 kb on + strand, within Psyr_4025at 4793.800 kb on - strand, within Psyr_4025at 4793.800 kb on - strand, within Psyr_4025at 4793.800 kb on - strand, within Psyr_4025at 4794.019 kb on - strand, within Psyr_4025at 4794.019 kb on - strand, within Psyr_4025

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.25 mg/ml
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4,791,062 + Psyr_4023 0.39 -1.7
4,791,062 + Psyr_4023 0.39 +0.6
4,791,062 + Psyr_4023 0.39 +0.3
4,791,062 + Psyr_4023 0.39 +0.4
4,791,062 + Psyr_4023 0.39 +0.9
4,791,062 + Psyr_4023 0.39 +0.5
4,791,062 + Psyr_4023 0.39 -1.5
4,791,063 - Psyr_4023 0.39 +0.3
4,791,063 - Psyr_4023 0.39 +0.3
4,791,063 - Psyr_4023 0.39 -0.2
4,791,063 - Psyr_4023 0.39 -2.5
4,791,063 - Psyr_4023 0.39 -1.1
4,791,078 + Psyr_4023 0.40 -2.8
4,791,078 + Psyr_4023 0.40 +0.4
4,791,079 - Psyr_4023 0.40 -0.6
4,791,093 + Psyr_4023 0.41 +0.0
4,791,093 + Psyr_4023 0.41 -1.6
4,791,093 + Psyr_4023 0.41 +1.8
4,791,093 + Psyr_4023 0.41 +0.3
4,791,093 + Psyr_4023 0.41 -1.8
4,791,093 + Psyr_4023 0.41 -1.4
4,791,093 + Psyr_4023 0.41 -1.4
4,791,093 + Psyr_4023 0.41 +2.1
4,791,093 + Psyr_4023 0.41 -0.4
4,791,093 + Psyr_4023 0.41 -0.1
4,791,093 + Psyr_4023 0.41 -0.6
4,791,093 + Psyr_4023 0.41 -1.8
4,791,093 + Psyr_4023 0.41 -1.3
4,791,093 + Psyr_4023 0.41 +2.1
4,791,093 + Psyr_4023 0.41 -1.8
4,791,093 + Psyr_4023 0.41 +0.4
4,791,093 + Psyr_4023 0.41 -1.4
4,791,094 - Psyr_4023 0.41 -0.5
4,791,094 - Psyr_4023 0.41 +1.6
4,791,094 - Psyr_4023 0.41 -0.7
4,791,094 - Psyr_4023 0.41 +0.0
4,791,094 - Psyr_4023 0.41 +0.2
4,791,094 - Psyr_4023 0.41 +0.7
4,791,094 - Psyr_4023 0.41 -0.5
4,791,094 - Psyr_4023 0.41 -0.7
4,791,094 - Psyr_4023 0.41 -0.2
4,791,094 - Psyr_4023 0.41 +1.0
4,791,094 - Psyr_4023 0.41 -0.1
4,791,094 - Psyr_4023 0.41 +0.2
4,791,095 + Psyr_4023 0.41 +0.6
4,791,095 + Psyr_4023 0.41 +0.6
4,791,095 + Psyr_4023 0.41 +0.6
4,791,095 + Psyr_4023 0.41 +0.2
4,791,095 + Psyr_4023 0.41 -0.2
4,791,095 + Psyr_4023 0.41 +0.3
4,791,095 + Psyr_4023 0.41 +2.6
4,791,095 + Psyr_4023 0.41 +0.6
4,791,095 + Psyr_4023 0.41 -0.3
4,791,095 + Psyr_4023 0.41 +0.9
4,791,095 + Psyr_4023 0.41 -0.2
4,791,095 + Psyr_4023 0.41 -0.5
4,791,095 + Psyr_4023 0.41 -2.2
4,791,095 + Psyr_4023 0.41 -0.8
4,791,095 + Psyr_4023 0.41 +0.8
4,791,096 - Psyr_4023 0.41 -0.6
4,791,096 - Psyr_4023 0.41 -0.3
4,791,096 - Psyr_4023 0.41 +0.8
4,791,096 - Psyr_4023 0.41 +0.2
4,791,096 - Psyr_4023 0.41 -0.6
4,791,096 - Psyr_4023 0.41 -2.8
4,791,096 - Psyr_4023 0.41 +0.0
4,791,096 - Psyr_4023 0.41 +1.1
4,791,096 - Psyr_4023 0.41 +0.6
4,791,096 - Psyr_4023 0.41 -0.0
4,791,096 - Psyr_4023 0.41 +0.8
4,791,096 - Psyr_4023 0.41 -0.2
4,791,120 - Psyr_4023 0.42 +0.3
4,791,120 - Psyr_4023 0.42 -0.2
4,791,120 - Psyr_4023 0.42 -0.3
4,791,156 + Psyr_4023 0.45 +1.4
4,791,156 + Psyr_4023 0.45 -0.1
4,791,156 + Psyr_4023 0.45 +1.7
4,791,156 + Psyr_4023 0.45 +1.1
4,791,156 + Psyr_4023 0.45 +0.1
4,791,156 + Psyr_4023 0.45 +0.1
4,791,156 + Psyr_4023 0.45 +0.2
4,791,156 + Psyr_4023 0.45 +0.3
4,791,156 + Psyr_4023 0.45 +0.2
4,791,156 + Psyr_4023 0.45 +0.8
4,791,157 - Psyr_4023 0.45 +0.1
4,791,157 - Psyr_4023 0.45 -0.2
4,791,157 - Psyr_4023 0.45 -0.0
4,791,157 - Psyr_4023 0.45 -1.6
4,791,157 - Psyr_4023 0.45 -0.1
4,791,157 - Psyr_4023 0.45 -2.0
4,791,157 - Psyr_4023 0.45 +2.1
4,791,157 - Psyr_4023 0.45 -1.4
4,791,157 - Psyr_4023 0.45 +0.7
4,791,204 - Psyr_4023 0.48 +0.6
4,791,210 + Psyr_4023 0.48 +0.0
4,791,232 - Psyr_4023 0.49 -0.0
4,791,232 - Psyr_4023 0.49 +0.9
4,791,232 - Psyr_4023 0.49 +1.4
4,791,276 - Psyr_4023 0.52 +0.2
4,791,567 + Psyr_4023 0.70 +2.4
4,791,567 + Psyr_4023 0.70 -1.0
4,791,567 + Psyr_4023 0.70 +0.7
4,791,567 + Psyr_4023 0.70 -0.3
4,791,567 + Psyr_4023 0.70 +0.1
4,791,568 - Psyr_4023 0.71 +0.7
4,791,568 - Psyr_4023 0.71 -0.3
4,791,568 - Psyr_4023 0.71 -0.1
4,791,568 - Psyr_4023 0.71 +1.0
4,791,868 - Psyr_4023 0.89 -0.1
4,792,438 + Psyr_4024 0.33 -0.8
4,792,438 + Psyr_4024 0.33 +1.5
4,792,438 + Psyr_4024 0.33 -0.3
4,792,439 - Psyr_4024 0.33 +1.1
4,792,538 + Psyr_4024 0.41 -0.3
4,792,539 - Psyr_4024 0.42 -0.9
4,792,539 - Psyr_4024 0.42 -0.1
4,792,591 + Psyr_4024 0.46 -0.6
4,792,591 + Psyr_4024 0.46 +0.6
4,792,591 + Psyr_4024 0.46 +0.8
4,792,591 + Psyr_4024 0.46 -0.9
4,792,591 + Psyr_4024 0.46 +0.9
4,792,592 - Psyr_4024 0.46 -0.8
4,792,592 - Psyr_4024 0.46 +0.9
4,792,592 - Psyr_4024 0.46 +0.4
4,792,685 + Psyr_4024 0.54 -0.4
4,792,756 + Psyr_4024 0.59 -0.5
4,792,757 - Psyr_4024 0.59 -0.4
4,792,858 + Psyr_4024 0.68 +0.1
4,793,051 + Psyr_4024 0.84 -0.4
4,793,051 + Psyr_4024 0.84 +0.9
4,793,051 + Psyr_4024 0.84 -0.8
4,793,052 - Psyr_4024 0.84 -0.1
4,793,052 - Psyr_4024 0.84 -0.2
4,793,052 - Psyr_4024 0.84 +0.2
4,793,052 - Psyr_4024 0.84 +0.8
4,793,052 - Psyr_4024 0.84 -0.9
4,793,052 - Psyr_4024 0.84 -0.7
4,793,052 - Psyr_4024 0.84 +0.1
4,793,052 - Psyr_4024 0.84 +1.3
4,793,052 - Psyr_4024 0.84 -0.3
4,793,052 - Psyr_4024 0.84 -2.0
4,793,247 - +0.4
4,793,584 - Psyr_4025 0.32 +1.1
4,793,799 + Psyr_4025 0.53 -0.4
4,793,799 + Psyr_4025 0.53 +2.1
4,793,800 - Psyr_4025 0.53 +0.9
4,793,800 - Psyr_4025 0.53 -0.9
4,793,800 - Psyr_4025 0.53 +0.9
4,794,019 - Psyr_4025 0.74 +0.4
4,794,019 - Psyr_4025 0.74 +2.1

Or see this region's nucleotide sequence