Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3166

Experiment: KB with Rotenone 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3165 and Psyr_3166 overlap by 15 nucleotidesPsyr_3166 and Psyr_3167 are separated by 16 nucleotides Psyr_3165: Psyr_3165 - transcriptional regulator, LysR family, at 3,794,140 to 3,795,048 _3165 Psyr_3166: Psyr_3166 - ABC transporter, periplasmic substrate-binding protein, putative, at 3,795,034 to 3,795,813 _3166 Psyr_3167: Psyr_3167 - Citrate-proton symport, at 3,795,830 to 3,797,131 _3167 Position (kb) 3795 3796Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3794.100 kb on + strandat 3794.103 kb on - strandat 3794.119 kb on + strandat 3794.326 kb on - strand, within Psyr_3165at 3794.458 kb on + strand, within Psyr_3165at 3794.458 kb on + strand, within Psyr_3165at 3794.461 kb on + strand, within Psyr_3165at 3794.461 kb on + strand, within Psyr_3165at 3794.461 kb on + strand, within Psyr_3165at 3794.461 kb on + strand, within Psyr_3165at 3794.461 kb on + strand, within Psyr_3165at 3794.461 kb on + strand, within Psyr_3165at 3794.461 kb on + strand, within Psyr_3165at 3794.461 kb on + strand, within Psyr_3165at 3794.461 kb on + strand, within Psyr_3165at 3794.644 kb on + strand, within Psyr_3165at 3794.648 kb on + strand, within Psyr_3165at 3794.648 kb on + strand, within Psyr_3165at 3794.648 kb on + strand, within Psyr_3165at 3794.648 kb on + strand, within Psyr_3165at 3794.649 kb on - strand, within Psyr_3165at 3794.649 kb on - strand, within Psyr_3165at 3794.680 kb on - strand, within Psyr_3165at 3794.710 kb on + strand, within Psyr_3165at 3794.710 kb on + strand, within Psyr_3165at 3794.710 kb on + strand, within Psyr_3165at 3794.722 kb on + strand, within Psyr_3165at 3794.722 kb on + strand, within Psyr_3165at 3794.723 kb on - strand, within Psyr_3165at 3794.723 kb on - strand, within Psyr_3165at 3794.723 kb on - strand, within Psyr_3165at 3794.723 kb on - strand, within Psyr_3165at 3794.952 kb on - strand, within Psyr_3165at 3795.362 kb on + strand, within Psyr_3166at 3795.363 kb on - strand, within Psyr_3166at 3795.363 kb on - strand, within Psyr_3166at 3795.363 kb on - strand, within Psyr_3166at 3795.386 kb on + strand, within Psyr_3166at 3795.420 kb on + strand, within Psyr_3166at 3795.421 kb on - strand, within Psyr_3166at 3795.800 kb on + strandat 3795.800 kb on + strandat 3795.801 kb on - strandat 3795.801 kb on - strandat 3795.818 kb on - strandat 3795.831 kb on + strandat 3796.009 kb on - strand, within Psyr_3167at 3796.083 kb on + strand, within Psyr_3167at 3796.083 kb on + strand, within Psyr_3167at 3796.083 kb on + strand, within Psyr_3167at 3796.084 kb on - strand, within Psyr_3167at 3796.084 kb on - strand, within Psyr_3167at 3796.084 kb on - strand, within Psyr_3167at 3796.084 kb on - strand, within Psyr_3167at 3796.084 kb on - strand, within Psyr_3167at 3796.084 kb on - strand, within Psyr_3167at 3796.084 kb on - strand, within Psyr_3167at 3796.126 kb on + strand, within Psyr_3167at 3796.261 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.363 kb on - strand, within Psyr_3167at 3796.645 kb on + strand, within Psyr_3167at 3796.665 kb on + strand, within Psyr_3167at 3796.665 kb on + strand, within Psyr_3167at 3796.665 kb on + strand, within Psyr_3167at 3796.665 kb on + strand, within Psyr_3167at 3796.704 kb on + strand, within Psyr_3167at 3796.704 kb on + strand, within Psyr_3167at 3796.704 kb on + strand, within Psyr_3167at 3796.705 kb on - strand, within Psyr_3167at 3796.705 kb on - strand, within Psyr_3167at 3796.705 kb on - strand, within Psyr_3167

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.25 mg/ml
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3,794,100 + -0.0
3,794,103 - +0.7
3,794,119 + -0.7
3,794,326 - Psyr_3165 0.20 +0.5
3,794,458 + Psyr_3165 0.35 +0.1
3,794,458 + Psyr_3165 0.35 -0.5
3,794,461 + Psyr_3165 0.35 +0.3
3,794,461 + Psyr_3165 0.35 -0.7
3,794,461 + Psyr_3165 0.35 -0.1
3,794,461 + Psyr_3165 0.35 +0.9
3,794,461 + Psyr_3165 0.35 -0.7
3,794,461 + Psyr_3165 0.35 +0.1
3,794,461 + Psyr_3165 0.35 +0.7
3,794,461 + Psyr_3165 0.35 +0.2
3,794,461 + Psyr_3165 0.35 +1.0
3,794,644 + Psyr_3165 0.55 +1.8
3,794,648 + Psyr_3165 0.56 +2.0
3,794,648 + Psyr_3165 0.56 +0.4
3,794,648 + Psyr_3165 0.56 +0.6
3,794,648 + Psyr_3165 0.56 +0.3
3,794,649 - Psyr_3165 0.56 +3.1
3,794,649 - Psyr_3165 0.56 -0.4
3,794,680 - Psyr_3165 0.59 -1.9
3,794,710 + Psyr_3165 0.63 -1.3
3,794,710 + Psyr_3165 0.63 +1.7
3,794,710 + Psyr_3165 0.63 +0.3
3,794,722 + Psyr_3165 0.64 +0.3
3,794,722 + Psyr_3165 0.64 +1.0
3,794,723 - Psyr_3165 0.64 -0.9
3,794,723 - Psyr_3165 0.64 -0.1
3,794,723 - Psyr_3165 0.64 +0.9
3,794,723 - Psyr_3165 0.64 +1.0
3,794,952 - Psyr_3165 0.89 +1.3
3,795,362 + Psyr_3166 0.42 +0.9
3,795,363 - Psyr_3166 0.42 +0.4
3,795,363 - Psyr_3166 0.42 -0.3
3,795,363 - Psyr_3166 0.42 +0.2
3,795,386 + Psyr_3166 0.45 -0.3
3,795,420 + Psyr_3166 0.49 +0.1
3,795,421 - Psyr_3166 0.50 +1.1
3,795,800 + -0.7
3,795,800 + -1.7
3,795,801 - -0.6
3,795,801 - -0.1
3,795,818 - -1.5
3,795,831 + -0.8
3,796,009 - Psyr_3167 0.14 +0.1
3,796,083 + Psyr_3167 0.19 -0.6
3,796,083 + Psyr_3167 0.19 -0.3
3,796,083 + Psyr_3167 0.19 -0.3
3,796,084 - Psyr_3167 0.20 +0.3
3,796,084 - Psyr_3167 0.20 -0.7
3,796,084 - Psyr_3167 0.20 -0.1
3,796,084 - Psyr_3167 0.20 +2.1
3,796,084 - Psyr_3167 0.20 +1.2
3,796,084 - Psyr_3167 0.20 -0.3
3,796,084 - Psyr_3167 0.20 +0.0
3,796,126 + Psyr_3167 0.23 -0.3
3,796,261 + Psyr_3167 0.33 -0.7
3,796,347 + Psyr_3167 0.40 -0.1
3,796,347 + Psyr_3167 0.40 +2.5
3,796,347 + Psyr_3167 0.40 +0.7
3,796,347 + Psyr_3167 0.40 +0.1
3,796,347 + Psyr_3167 0.40 -1.7
3,796,347 + Psyr_3167 0.40 +0.3
3,796,347 + Psyr_3167 0.40 -0.3
3,796,347 + Psyr_3167 0.40 -0.7
3,796,347 + Psyr_3167 0.40 +0.7
3,796,347 + Psyr_3167 0.40 -0.3
3,796,347 + Psyr_3167 0.40 +0.3
3,796,348 - Psyr_3167 0.40 +0.4
3,796,348 - Psyr_3167 0.40 -0.2
3,796,348 - Psyr_3167 0.40 +0.8
3,796,348 - Psyr_3167 0.40 +0.6
3,796,348 - Psyr_3167 0.40 +0.4
3,796,348 - Psyr_3167 0.40 +0.7
3,796,348 - Psyr_3167 0.40 +0.3
3,796,348 - Psyr_3167 0.40 +0.4
3,796,348 - Psyr_3167 0.40 -0.3
3,796,348 - Psyr_3167 0.40 -1.1
3,796,348 - Psyr_3167 0.40 +2.8
3,796,348 - Psyr_3167 0.40 -1.2
3,796,348 - Psyr_3167 0.40 -1.1
3,796,348 - Psyr_3167 0.40 +0.2
3,796,348 - Psyr_3167 0.40 +0.7
3,796,348 - Psyr_3167 0.40 +0.2
3,796,363 - Psyr_3167 0.41 -0.4
3,796,645 + Psyr_3167 0.63 +0.1
3,796,665 + Psyr_3167 0.64 +1.7
3,796,665 + Psyr_3167 0.64 -0.4
3,796,665 + Psyr_3167 0.64 -0.6
3,796,665 + Psyr_3167 0.64 +0.0
3,796,704 + Psyr_3167 0.67 -0.7
3,796,704 + Psyr_3167 0.67 +0.0
3,796,704 + Psyr_3167 0.67 +1.0
3,796,705 - Psyr_3167 0.67 +0.8
3,796,705 - Psyr_3167 0.67 +1.6
3,796,705 - Psyr_3167 0.67 +0.1

Or see this region's nucleotide sequence