Experiment: KB with Rotenone 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0579 and Psyr_0580 overlap by 4 nucleotides Psyr_0580 and Psyr_0581 are separated by 257 nucleotides Psyr_0581 and Psyr_0582 are separated by 28 nucleotides Psyr_0582 and Psyr_0583 are separated by 39 nucleotides
Psyr_0579: Psyr_0579 - RNAse R, at 659,938 to 662,571
_0579
Psyr_0580: Psyr_0580 - 23S rRNA Gm-2251 2'-O-methyltransferase, at 662,568 to 663,323
_0580
Psyr_0581: Psyr_0581 - SSU ribosomal protein S6P, at 663,581 to 664,006
_0581
Psyr_0582: Psyr_0582 - SSU ribosomal protein S18P, at 664,035 to 664,265
_0582
Psyr_0583: Psyr_0583 - membrane protein, putative, at 664,305 to 665,201
_0583
Position (kb) 662
663
664 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 661.672 kb on + strand, within Psyr_0579 at 661.672 kb on + strand, within Psyr_0579 at 661.672 kb on + strand, within Psyr_0579 at 661.672 kb on + strand, within Psyr_0579 at 661.896 kb on - strand, within Psyr_0579 at 661.918 kb on + strand, within Psyr_0579 at 661.918 kb on + strand, within Psyr_0579 at 661.918 kb on + strand, within Psyr_0579 at 661.918 kb on + strand, within Psyr_0579 at 661.918 kb on + strand, within Psyr_0579 at 661.919 kb on - strand, within Psyr_0579 at 661.967 kb on + strand, within Psyr_0579 at 662.001 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.047 kb on + strand, within Psyr_0579 at 662.048 kb on - strand, within Psyr_0579 at 662.048 kb on - strand, within Psyr_0579 at 662.050 kb on + strand, within Psyr_0579 at 662.051 kb on - strand, within Psyr_0579 at 662.227 kb on - strand, within Psyr_0579 at 662.227 kb on - strand, within Psyr_0579 at 662.299 kb on - strand, within Psyr_0579 at 662.373 kb on + strand at 662.421 kb on + strand at 662.550 kb on + strand at 662.550 kb on + strand at 662.589 kb on + strand at 662.590 kb on - strand at 662.605 kb on + strand at 662.606 kb on - strand at 662.606 kb on - strand at 662.606 kb on - strand at 663.152 kb on + strand, within Psyr_0580 at 663.152 kb on + strand, within Psyr_0580 at 663.152 kb on + strand, within Psyr_0580 at 663.207 kb on + strand, within Psyr_0580 at 663.321 kb on + strand at 663.322 kb on - strand at 663.322 kb on - strand at 663.324 kb on + strand at 663.324 kb on + strand at 663.324 kb on + strand at 663.352 kb on + strand at 663.352 kb on + strand at 663.352 kb on + strand at 663.353 kb on - strand at 663.353 kb on - strand at 663.353 kb on - strand at 663.359 kb on + strand at 663.359 kb on + strand at 663.359 kb on + strand at 663.359 kb on + strand at 663.360 kb on - strand at 663.360 kb on - strand at 663.360 kb on - strand at 663.360 kb on - strand at 663.360 kb on - strand at 663.360 kb on - strand at 663.376 kb on + strand at 663.376 kb on + strand at 663.377 kb on - strand at 663.377 kb on - strand at 663.377 kb on - strand at 663.377 kb on - strand at 663.377 kb on - strand at 663.377 kb on - strand at 663.377 kb on - strand at 663.377 kb on - strand at 663.382 kb on + strand at 663.382 kb on + strand at 663.383 kb on - strand at 663.383 kb on - strand at 663.383 kb on - strand at 663.383 kb on - strand at 663.421 kb on + strand at 663.421 kb on + strand at 663.422 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rotenone 0.25 mg/ml remove 661,672 + Psyr_0579 0.66 -0.9 661,672 + Psyr_0579 0.66 -0.0 661,672 + Psyr_0579 0.66 -1.8 661,672 + Psyr_0579 0.66 -0.6 661,896 - Psyr_0579 0.74 -0.6 661,918 + Psyr_0579 0.75 +0.6 661,918 + Psyr_0579 0.75 -0.3 661,918 + Psyr_0579 0.75 +0.1 661,918 + Psyr_0579 0.75 -0.0 661,918 + Psyr_0579 0.75 -1.7 661,919 - Psyr_0579 0.75 -0.1 661,967 + Psyr_0579 0.77 +0.1 662,001 + Psyr_0579 0.78 +0.3 662,005 + Psyr_0579 0.78 -1.4 662,005 + Psyr_0579 0.78 -1.1 662,005 + Psyr_0579 0.78 -1.7 662,005 + Psyr_0579 0.78 -0.2 662,005 + Psyr_0579 0.78 -2.4 662,005 + Psyr_0579 0.78 -0.4 662,005 + Psyr_0579 0.78 -1.1 662,005 + Psyr_0579 0.78 -1.0 662,005 + Psyr_0579 0.78 -1.1 662,005 + Psyr_0579 0.78 -1.2 662,005 + Psyr_0579 0.78 -0.5 662,005 + Psyr_0579 0.78 -1.2 662,005 + Psyr_0579 0.78 -1.0 662,005 + Psyr_0579 0.78 -0.5 662,005 + Psyr_0579 0.78 -1.8 662,006 - Psyr_0579 0.79 -0.2 662,006 - Psyr_0579 0.79 -1.5 662,006 - Psyr_0579 0.79 -0.6 662,006 - Psyr_0579 0.79 -2.2 662,006 - Psyr_0579 0.79 -0.0 662,006 - Psyr_0579 0.79 -0.1 662,006 - Psyr_0579 0.79 -1.5 662,006 - Psyr_0579 0.79 -0.2 662,006 - Psyr_0579 0.79 -0.4 662,047 + Psyr_0579 0.80 -0.4 662,048 - Psyr_0579 0.80 -0.1 662,048 - Psyr_0579 0.80 -2.2 662,050 + Psyr_0579 0.80 -0.4 662,051 - Psyr_0579 0.80 -1.4 662,227 - Psyr_0579 0.87 +0.3 662,227 - Psyr_0579 0.87 -0.4 662,299 - Psyr_0579 0.90 +0.5 662,373 + -0.7 662,421 + -0.1 662,550 + -1.4 662,550 + +0.8 662,589 + -0.6 662,590 - -1.7 662,605 + -0.5 662,606 - +0.0 662,606 - -0.6 662,606 - -2.4 663,152 + Psyr_0580 0.77 +0.6 663,152 + Psyr_0580 0.77 +0.1 663,152 + Psyr_0580 0.77 +0.6 663,207 + Psyr_0580 0.85 +0.9 663,321 + -0.6 663,322 - -1.6 663,322 - +0.9 663,324 + +0.2 663,324 + -0.4 663,324 + -0.5 663,352 + +0.9 663,352 + +0.4 663,352 + -0.2 663,353 - +0.0 663,353 - -0.3 663,353 - -1.0 663,359 + +0.2 663,359 + +1.4 663,359 + -0.5 663,359 + -0.0 663,360 - -1.1 663,360 - -0.1 663,360 - -0.1 663,360 - +1.1 663,360 - +0.5 663,360 - +0.5 663,376 + +0.1 663,376 + -0.0 663,377 - -0.5 663,377 - +0.4 663,377 - -0.0 663,377 - -0.8 663,377 - +1.1 663,377 - +1.3 663,377 - -0.2 663,377 - -1.0 663,382 + -3.5 663,382 + +0.8 663,383 - -1.3 663,383 - +0.1 663,383 - -0.4 663,383 - -0.3 663,421 + -0.0 663,421 + -0.1 663,422 - +0.1
Or see this region's nucleotide sequence