Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4294

Experiment: D-Glucose 20mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_4292 and Echvi_4293 are separated by 33 nucleotidesEchvi_4293 and Echvi_4294 are separated by 251 nucleotidesEchvi_4294 and Echvi_4295 are separated by 94 nucleotides Echvi_4292: Echvi_4292 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 5,135,386 to 5,136,114 _4292 Echvi_4293: Echvi_4293 - hypothetical protein, at 5,136,148 to 5,136,384 _4293 Echvi_4294: Echvi_4294 - AraC-type DNA-binding domain-containing proteins, at 5,136,636 to 5,137,091 _4294 Echvi_4295: Echvi_4295 - Predicted RNA polymerase sigma factor containing a TPR repeat domain, at 5,137,186 to 5,138,430 _4295 Position (kb) 5136 5137 5138Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5135.681 kb on - strand, within Echvi_4292at 5135.681 kb on - strand, within Echvi_4292at 5135.681 kb on - strand, within Echvi_4292at 5135.681 kb on - strand, within Echvi_4292at 5135.688 kb on - strand, within Echvi_4292at 5135.793 kb on + strand, within Echvi_4292at 5135.815 kb on + strand, within Echvi_4292at 5135.815 kb on + strand, within Echvi_4292at 5135.815 kb on + strand, within Echvi_4292at 5135.823 kb on - strand, within Echvi_4292at 5135.833 kb on - strand, within Echvi_4292at 5135.848 kb on + strand, within Echvi_4292at 5135.863 kb on + strand, within Echvi_4292at 5135.871 kb on + strand, within Echvi_4292at 5135.871 kb on + strand, within Echvi_4292at 5135.871 kb on + strand, within Echvi_4292at 5135.872 kb on - strand, within Echvi_4292at 5135.877 kb on + strand, within Echvi_4292at 5135.883 kb on + strand, within Echvi_4292at 5135.883 kb on + strand, within Echvi_4292at 5135.889 kb on + strand, within Echvi_4292at 5135.895 kb on + strand, within Echvi_4292at 5135.991 kb on + strand, within Echvi_4292at 5136.127 kb on + strandat 5136.128 kb on - strandat 5136.135 kb on + strandat 5136.135 kb on + strandat 5136.149 kb on + strandat 5136.149 kb on + strandat 5136.150 kb on - strandat 5136.167 kb on - strandat 5136.186 kb on + strand, within Echvi_4293at 5136.186 kb on + strand, within Echvi_4293at 5136.190 kb on - strand, within Echvi_4293at 5136.210 kb on + strand, within Echvi_4293at 5136.270 kb on + strand, within Echvi_4293at 5136.271 kb on - strand, within Echvi_4293at 5136.271 kb on - strand, within Echvi_4293at 5136.282 kb on + strand, within Echvi_4293at 5136.283 kb on - strand, within Echvi_4293at 5136.290 kb on + strand, within Echvi_4293at 5136.291 kb on - strand, within Echvi_4293at 5136.295 kb on + strand, within Echvi_4293at 5136.316 kb on + strand, within Echvi_4293at 5136.317 kb on - strand, within Echvi_4293at 5136.317 kb on - strand, within Echvi_4293at 5136.323 kb on - strand, within Echvi_4293at 5136.323 kb on - strand, within Echvi_4293at 5136.323 kb on - strand, within Echvi_4293at 5136.417 kb on + strandat 5136.462 kb on + strandat 5136.477 kb on + strandat 5136.478 kb on - strandat 5136.486 kb on + strandat 5136.487 kb on - strandat 5136.495 kb on - strandat 5136.530 kb on - strandat 5136.568 kb on + strandat 5136.569 kb on - strandat 5136.569 kb on - strandat 5136.637 kb on + strandat 5136.686 kb on - strand, within Echvi_4294at 5136.691 kb on + strandat 5136.722 kb on + strand, within Echvi_4294at 5136.722 kb on + strand, within Echvi_4294at 5136.746 kb on + strand, within Echvi_4294at 5136.747 kb on - strand, within Echvi_4294at 5136.801 kb on - strand, within Echvi_4294at 5136.818 kb on + strand, within Echvi_4294at 5136.818 kb on + strand, within Echvi_4294at 5136.818 kb on + strand, within Echvi_4294at 5136.819 kb on - strand, within Echvi_4294at 5136.850 kb on - strand, within Echvi_4294at 5136.854 kb on - strand, within Echvi_4294at 5136.857 kb on + strand, within Echvi_4294at 5136.858 kb on - strand, within Echvi_4294at 5136.974 kb on - strand, within Echvi_4294at 5137.015 kb on + strand, within Echvi_4294at 5137.015 kb on + strand, within Echvi_4294at 5137.015 kb on + strand, within Echvi_4294at 5137.047 kb on + strandat 5137.047 kb on + strandat 5137.058 kb on - strandat 5137.059 kb on + strandat 5137.060 kb on - strandat 5137.060 kb on - strandat 5137.064 kb on - strandat 5137.193 kb on - strandat 5137.195 kb on - strandat 5137.195 kb on - strandat 5137.195 kb on - strandat 5137.261 kb on + strandat 5137.274 kb on + strandat 5137.277 kb on + strandat 5137.291 kb on + strandat 5137.312 kb on + strand, within Echvi_4295at 5137.313 kb on - strand, within Echvi_4295at 5137.313 kb on - strand, within Echvi_4295at 5137.317 kb on - strand, within Echvi_4295at 5137.334 kb on + strand, within Echvi_4295at 5137.335 kb on - strand, within Echvi_4295at 5137.351 kb on + strand, within Echvi_4295at 5137.453 kb on + strand, within Echvi_4295at 5137.467 kb on - strandat 5137.492 kb on - strand, within Echvi_4295at 5137.522 kb on + strand, within Echvi_4295at 5137.523 kb on - strand, within Echvi_4295at 5137.523 kb on - strand, within Echvi_4295at 5137.523 kb on - strand, within Echvi_4295at 5137.523 kb on - strand, within Echvi_4295at 5137.523 kb on - strand, within Echvi_4295at 5137.523 kb on - strand, within Echvi_4295at 5137.581 kb on - strand, within Echvi_4295at 5137.583 kb on + strand, within Echvi_4295at 5137.584 kb on - strand, within Echvi_4295at 5137.608 kb on + strand, within Echvi_4295at 5137.609 kb on - strand, within Echvi_4295at 5137.609 kb on - strand, within Echvi_4295at 5137.754 kb on - strand, within Echvi_4295at 5137.754 kb on - strand, within Echvi_4295at 5137.768 kb on + strand, within Echvi_4295at 5137.769 kb on - strand, within Echvi_4295at 5137.823 kb on + strand, within Echvi_4295at 5137.844 kb on + strand, within Echvi_4295at 5137.844 kb on + strand, within Echvi_4295at 5137.845 kb on - strand, within Echvi_4295at 5137.845 kb on - strand, within Echvi_4295at 5137.921 kb on - strand, within Echvi_4295at 5137.957 kb on - strand, within Echvi_4295

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20mM (C)
remove
5,135,681 - Echvi_4292 0.40 -0.9
5,135,681 - Echvi_4292 0.40 -0.6
5,135,681 - Echvi_4292 0.40 +0.6
5,135,681 - Echvi_4292 0.40 -1.3
5,135,688 - Echvi_4292 0.41 -0.5
5,135,793 + Echvi_4292 0.56 -0.2
5,135,815 + Echvi_4292 0.59 -0.1
5,135,815 + Echvi_4292 0.59 +0.1
5,135,815 + Echvi_4292 0.59 +0.1
5,135,823 - Echvi_4292 0.60 -2.9
5,135,833 - Echvi_4292 0.61 -1.6
5,135,848 + Echvi_4292 0.63 +1.4
5,135,863 + Echvi_4292 0.65 +0.5
5,135,871 + Echvi_4292 0.67 +1.1
5,135,871 + Echvi_4292 0.67 +2.0
5,135,871 + Echvi_4292 0.67 +0.1
5,135,872 - Echvi_4292 0.67 +0.4
5,135,877 + Echvi_4292 0.67 -0.1
5,135,883 + Echvi_4292 0.68 -0.2
5,135,883 + Echvi_4292 0.68 -1.5
5,135,889 + Echvi_4292 0.69 +1.3
5,135,895 + Echvi_4292 0.70 -0.9
5,135,991 + Echvi_4292 0.83 +1.0
5,136,127 + +0.1
5,136,128 - -0.7
5,136,135 + +0.2
5,136,135 + -0.2
5,136,149 + -1.8
5,136,149 + +1.0
5,136,150 - +0.3
5,136,167 - +0.2
5,136,186 + Echvi_4293 0.16 +0.1
5,136,186 + Echvi_4293 0.16 -1.3
5,136,190 - Echvi_4293 0.18 +0.6
5,136,210 + Echvi_4293 0.26 +0.5
5,136,270 + Echvi_4293 0.51 +0.2
5,136,271 - Echvi_4293 0.52 -0.6
5,136,271 - Echvi_4293 0.52 -1.4
5,136,282 + Echvi_4293 0.57 +0.5
5,136,283 - Echvi_4293 0.57 -0.1
5,136,290 + Echvi_4293 0.60 +2.6
5,136,291 - Echvi_4293 0.60 -0.1
5,136,295 + Echvi_4293 0.62 -1.1
5,136,316 + Echvi_4293 0.71 -1.4
5,136,317 - Echvi_4293 0.71 +0.1
5,136,317 - Echvi_4293 0.71 -0.3
5,136,323 - Echvi_4293 0.74 -0.1
5,136,323 - Echvi_4293 0.74 +0.2
5,136,323 - Echvi_4293 0.74 +0.0
5,136,417 + -0.0
5,136,462 + -0.3
5,136,477 + -0.3
5,136,478 - -0.3
5,136,486 + -1.1
5,136,487 - +0.8
5,136,495 - -2.6
5,136,530 - +0.8
5,136,568 + -0.8
5,136,569 - -0.4
5,136,569 - +0.6
5,136,637 + +1.7
5,136,686 - Echvi_4294 0.11 +1.7
5,136,691 + +0.3
5,136,722 + Echvi_4294 0.19 +0.4
5,136,722 + Echvi_4294 0.19 -1.7
5,136,746 + Echvi_4294 0.24 -0.1
5,136,747 - Echvi_4294 0.24 -1.3
5,136,801 - Echvi_4294 0.36 -0.6
5,136,818 + Echvi_4294 0.40 +1.0
5,136,818 + Echvi_4294 0.40 -1.7
5,136,818 + Echvi_4294 0.40 +0.6
5,136,819 - Echvi_4294 0.40 -0.1
5,136,850 - Echvi_4294 0.47 -0.0
5,136,854 - Echvi_4294 0.48 -1.4
5,136,857 + Echvi_4294 0.48 -0.5
5,136,858 - Echvi_4294 0.49 -0.8
5,136,974 - Echvi_4294 0.74 -1.8
5,137,015 + Echvi_4294 0.83 +0.8
5,137,015 + Echvi_4294 0.83 -1.2
5,137,015 + Echvi_4294 0.83 -0.9
5,137,047 + -0.8
5,137,047 + -0.1
5,137,058 - -0.6
5,137,059 + -0.3
5,137,060 - -2.6
5,137,060 - -1.0
5,137,064 - -0.0
5,137,193 - -1.0
5,137,195 - +0.6
5,137,195 - +0.3
5,137,195 - -1.0
5,137,261 + -0.9
5,137,274 + +0.3
5,137,277 + +0.7
5,137,291 + -1.0
5,137,312 + Echvi_4295 0.10 +1.5
5,137,313 - Echvi_4295 0.10 -1.4
5,137,313 - Echvi_4295 0.10 +0.1
5,137,317 - Echvi_4295 0.11 -0.1
5,137,334 + Echvi_4295 0.12 -0.1
5,137,335 - Echvi_4295 0.12 -0.4
5,137,351 + Echvi_4295 0.13 -0.6
5,137,453 + Echvi_4295 0.21 +0.1
5,137,467 - -3.3
5,137,492 - Echvi_4295 0.25 +1.0
5,137,522 + Echvi_4295 0.27 -0.9
5,137,523 - Echvi_4295 0.27 +0.1
5,137,523 - Echvi_4295 0.27 +0.5
5,137,523 - Echvi_4295 0.27 +1.3
5,137,523 - Echvi_4295 0.27 -0.0
5,137,523 - Echvi_4295 0.27 -1.1
5,137,523 - Echvi_4295 0.27 -0.9
5,137,581 - Echvi_4295 0.32 +0.7
5,137,583 + Echvi_4295 0.32 +0.0
5,137,584 - Echvi_4295 0.32 -0.4
5,137,608 + Echvi_4295 0.34 -0.8
5,137,609 - Echvi_4295 0.34 -0.1
5,137,609 - Echvi_4295 0.34 +0.0
5,137,754 - Echvi_4295 0.46 +0.2
5,137,754 - Echvi_4295 0.46 -0.1
5,137,768 + Echvi_4295 0.47 +1.1
5,137,769 - Echvi_4295 0.47 +1.4
5,137,823 + Echvi_4295 0.51 +0.6
5,137,844 + Echvi_4295 0.53 -0.7
5,137,844 + Echvi_4295 0.53 +0.2
5,137,845 - Echvi_4295 0.53 -0.7
5,137,845 - Echvi_4295 0.53 -0.8
5,137,921 - Echvi_4295 0.59 -0.1
5,137,957 - Echvi_4295 0.62 +0.2

Or see this region's nucleotide sequence