Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1419

Experiment: D-Glucose 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1417 and Echvi_1418 are separated by 14 nucleotidesEchvi_1418 and Echvi_1419 overlap by 4 nucleotidesEchvi_1419 and Echvi_1420 are separated by 19 nucleotidesEchvi_1420 and Echvi_1421 are separated by 21 nucleotidesEchvi_1421 and Echvi_1422 overlap by 8 nucleotides Echvi_1417: Echvi_1417 - Fibrobacter succinogenes major domain (Fib_succ_major)., at 1,632,245 to 1,633,645 _1417 Echvi_1418: Echvi_1418 - hypothetical protein, at 1,633,660 to 1,633,818 _1418 Echvi_1419: Echvi_1419 - Predicted enzyme related to lactoylglutathione lyase, at 1,633,815 to 1,634,192 _1419 Echvi_1420: Echvi_1420 - hypothetical protein, at 1,634,212 to 1,634,565 _1420 Echvi_1421: Echvi_1421 - Dihydrofolate reductase, at 1,634,587 to 1,635,147 _1421 Echvi_1422: Echvi_1422 - hypothetical protein, at 1,635,140 to 1,635,664 _1422 Position (kb) 1633 1634 1635Strain fitness (log2 ratio) -2 -1 0 1 2at 1632.826 kb on + strand, within Echvi_1417at 1632.831 kb on + strand, within Echvi_1417at 1632.831 kb on + strand, within Echvi_1417at 1632.831 kb on + strand, within Echvi_1417at 1632.831 kb on + strand, within Echvi_1417at 1632.831 kb on + strand, within Echvi_1417at 1632.832 kb on - strand, within Echvi_1417at 1632.832 kb on - strand, within Echvi_1417at 1632.832 kb on - strand, within Echvi_1417at 1632.835 kb on + strand, within Echvi_1417at 1632.892 kb on - strand, within Echvi_1417at 1632.935 kb on + strand, within Echvi_1417at 1632.985 kb on + strand, within Echvi_1417at 1632.986 kb on - strand, within Echvi_1417at 1633.024 kb on + strand, within Echvi_1417at 1633.024 kb on + strand, within Echvi_1417at 1633.027 kb on - strand, within Echvi_1417at 1633.049 kb on + strand, within Echvi_1417at 1633.124 kb on + strand, within Echvi_1417at 1633.125 kb on - strand, within Echvi_1417at 1633.128 kb on + strand, within Echvi_1417at 1633.129 kb on - strand, within Echvi_1417at 1633.129 kb on - strand, within Echvi_1417at 1633.129 kb on - strand, within Echvi_1417at 1633.129 kb on - strand, within Echvi_1417at 1633.129 kb on - strand, within Echvi_1417at 1633.129 kb on - strand, within Echvi_1417at 1633.129 kb on - strand, within Echvi_1417at 1633.130 kb on + strand, within Echvi_1417at 1633.130 kb on + strand, within Echvi_1417at 1633.130 kb on + strand, within Echvi_1417at 1633.130 kb on + strand, within Echvi_1417at 1633.130 kb on + strand, within Echvi_1417at 1633.130 kb on + strand, within Echvi_1417at 1633.130 kb on + strand, within Echvi_1417at 1633.130 kb on + strand, within Echvi_1417at 1633.130 kb on + strand, within Echvi_1417at 1633.130 kb on + strand, within Echvi_1417at 1633.130 kb on + strand, within Echvi_1417at 1633.130 kb on + strand, within Echvi_1417at 1633.130 kb on + strand, within Echvi_1417at 1633.130 kb on + strand, within Echvi_1417at 1633.131 kb on - strand, within Echvi_1417at 1633.131 kb on - strand, within Echvi_1417at 1633.131 kb on - strand, within Echvi_1417at 1633.131 kb on - strand, within Echvi_1417at 1633.131 kb on - strand, within Echvi_1417at 1633.134 kb on + strand, within Echvi_1417at 1633.137 kb on + strand, within Echvi_1417at 1633.138 kb on - strand, within Echvi_1417at 1633.138 kb on - strand, within Echvi_1417at 1633.140 kb on + strand, within Echvi_1417at 1633.140 kb on + strand, within Echvi_1417at 1633.140 kb on + strand, within Echvi_1417at 1633.140 kb on + strand, within Echvi_1417at 1633.140 kb on + strand, within Echvi_1417at 1633.141 kb on - strand, within Echvi_1417at 1633.141 kb on - strand, within Echvi_1417at 1633.197 kb on - strand, within Echvi_1417at 1633.197 kb on - strand, within Echvi_1417at 1633.245 kb on - strand, within Echvi_1417at 1633.294 kb on + strand, within Echvi_1417at 1633.294 kb on + strand, within Echvi_1417at 1633.295 kb on - strand, within Echvi_1417at 1633.295 kb on - strand, within Echvi_1417at 1633.296 kb on + strand, within Echvi_1417at 1633.296 kb on + strand, within Echvi_1417at 1633.305 kb on + strand, within Echvi_1417at 1633.328 kb on + strand, within Echvi_1417at 1633.328 kb on + strand, within Echvi_1417at 1633.333 kb on + strand, within Echvi_1417at 1633.338 kb on + strand, within Echvi_1417at 1633.338 kb on + strand, within Echvi_1417at 1633.338 kb on + strand, within Echvi_1417at 1633.341 kb on + strand, within Echvi_1417at 1633.347 kb on + strand, within Echvi_1417at 1633.402 kb on - strand, within Echvi_1417at 1633.402 kb on - strand, within Echvi_1417at 1633.468 kb on + strand, within Echvi_1417at 1633.469 kb on - strand, within Echvi_1417at 1633.513 kb on - strandat 1633.534 kb on + strandat 1633.534 kb on + strandat 1633.602 kb on - strandat 1633.625 kb on + strandat 1633.626 kb on - strandat 1633.629 kb on + strandat 1633.630 kb on - strandat 1633.857 kb on - strand, within Echvi_1419at 1633.916 kb on + strand, within Echvi_1419at 1633.925 kb on + strand, within Echvi_1419at 1633.925 kb on + strand, within Echvi_1419at 1633.925 kb on + strand, within Echvi_1419at 1633.926 kb on - strand, within Echvi_1419at 1633.926 kb on - strand, within Echvi_1419at 1633.987 kb on - strand, within Echvi_1419at 1634.006 kb on + strand, within Echvi_1419at 1634.088 kb on - strand, within Echvi_1419at 1634.116 kb on - strand, within Echvi_1419at 1634.187 kb on + strandat 1634.187 kb on + strandat 1634.188 kb on - strandat 1634.188 kb on - strandat 1634.196 kb on + strandat 1634.279 kb on + strand, within Echvi_1420at 1634.279 kb on + strand, within Echvi_1420at 1634.279 kb on + strand, within Echvi_1420at 1634.280 kb on - strand, within Echvi_1420at 1634.280 kb on - strand, within Echvi_1420at 1634.280 kb on - strand, within Echvi_1420at 1634.280 kb on - strand, within Echvi_1420at 1634.280 kb on - strand, within Echvi_1420at 1634.394 kb on + strand, within Echvi_1420at 1634.394 kb on + strand, within Echvi_1420at 1634.395 kb on - strand, within Echvi_1420at 1634.399 kb on - strand, within Echvi_1420at 1634.502 kb on - strand, within Echvi_1420at 1634.506 kb on + strand, within Echvi_1420at 1634.507 kb on - strand, within Echvi_1420at 1634.543 kb on - strandat 1634.594 kb on - strandat 1634.606 kb on + strandat 1634.614 kb on + strandat 1634.615 kb on - strandat 1634.619 kb on + strandat 1634.620 kb on - strandat 1634.650 kb on + strand, within Echvi_1421at 1634.651 kb on - strand, within Echvi_1421at 1634.707 kb on + strand, within Echvi_1421at 1634.708 kb on - strand, within Echvi_1421at 1634.720 kb on - strand, within Echvi_1421at 1634.827 kb on + strand, within Echvi_1421at 1634.955 kb on - strand, within Echvi_1421at 1634.987 kb on + strand, within Echvi_1421at 1634.988 kb on - strand, within Echvi_1421at 1634.991 kb on + strand, within Echvi_1421at 1634.991 kb on + strand, within Echvi_1421at 1634.991 kb on + strand, within Echvi_1421at 1635.024 kb on + strand, within Echvi_1421at 1635.024 kb on + strand, within Echvi_1421at 1635.025 kb on - strand, within Echvi_1421at 1635.025 kb on - strand, within Echvi_1421at 1635.025 kb on - strand, within Echvi_1421at 1635.026 kb on + strand, within Echvi_1421at 1635.027 kb on - strand, within Echvi_1421at 1635.027 kb on - strand, within Echvi_1421at 1635.027 kb on - strand, within Echvi_1421at 1635.060 kb on + strand, within Echvi_1421at 1635.060 kb on + strand, within Echvi_1421at 1635.141 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20mM (C)
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1,632,826 + Echvi_1417 0.41 -1.5
1,632,831 + Echvi_1417 0.42 +0.2
1,632,831 + Echvi_1417 0.42 +0.2
1,632,831 + Echvi_1417 0.42 -0.2
1,632,831 + Echvi_1417 0.42 +1.2
1,632,831 + Echvi_1417 0.42 -0.1
1,632,832 - Echvi_1417 0.42 -1.2
1,632,832 - Echvi_1417 0.42 +0.5
1,632,832 - Echvi_1417 0.42 -0.9
1,632,835 + Echvi_1417 0.42 -0.6
1,632,892 - Echvi_1417 0.46 +0.9
1,632,935 + Echvi_1417 0.49 -1.5
1,632,985 + Echvi_1417 0.53 -1.4
1,632,986 - Echvi_1417 0.53 -0.1
1,633,024 + Echvi_1417 0.56 -0.0
1,633,024 + Echvi_1417 0.56 +0.2
1,633,027 - Echvi_1417 0.56 -0.9
1,633,049 + Echvi_1417 0.57 -1.4
1,633,124 + Echvi_1417 0.63 +0.2
1,633,125 - Echvi_1417 0.63 +0.7
1,633,128 + Echvi_1417 0.63 -0.1
1,633,129 - Echvi_1417 0.63 +0.0
1,633,129 - Echvi_1417 0.63 -0.9
1,633,129 - Echvi_1417 0.63 -0.7
1,633,129 - Echvi_1417 0.63 +0.1
1,633,129 - Echvi_1417 0.63 +1.1
1,633,129 - Echvi_1417 0.63 -0.7
1,633,129 - Echvi_1417 0.63 +1.2
1,633,130 + Echvi_1417 0.63 -0.6
1,633,130 + Echvi_1417 0.63 +1.0
1,633,130 + Echvi_1417 0.63 +0.3
1,633,130 + Echvi_1417 0.63 +0.7
1,633,130 + Echvi_1417 0.63 +0.9
1,633,130 + Echvi_1417 0.63 +0.6
1,633,130 + Echvi_1417 0.63 -0.2
1,633,130 + Echvi_1417 0.63 +0.2
1,633,130 + Echvi_1417 0.63 -0.6
1,633,130 + Echvi_1417 0.63 -0.3
1,633,130 + Echvi_1417 0.63 -0.7
1,633,130 + Echvi_1417 0.63 -0.2
1,633,130 + Echvi_1417 0.63 -1.5
1,633,130 + Echvi_1417 0.63 -0.3
1,633,131 - Echvi_1417 0.63 +0.4
1,633,131 - Echvi_1417 0.63 -1.1
1,633,131 - Echvi_1417 0.63 -0.2
1,633,131 - Echvi_1417 0.63 -0.2
1,633,131 - Echvi_1417 0.63 +0.2
1,633,134 + Echvi_1417 0.63 -1.3
1,633,137 + Echvi_1417 0.64 -0.8
1,633,138 - Echvi_1417 0.64 -0.0
1,633,138 - Echvi_1417 0.64 -1.2
1,633,140 + Echvi_1417 0.64 +0.0
1,633,140 + Echvi_1417 0.64 -1.8
1,633,140 + Echvi_1417 0.64 +2.6
1,633,140 + Echvi_1417 0.64 +0.2
1,633,140 + Echvi_1417 0.64 -0.5
1,633,141 - Echvi_1417 0.64 -1.3
1,633,141 - Echvi_1417 0.64 -0.1
1,633,197 - Echvi_1417 0.68 -0.5
1,633,197 - Echvi_1417 0.68 +0.6
1,633,245 - Echvi_1417 0.71 +0.5
1,633,294 + Echvi_1417 0.75 +1.2
1,633,294 + Echvi_1417 0.75 +0.5
1,633,295 - Echvi_1417 0.75 -0.8
1,633,295 - Echvi_1417 0.75 -0.8
1,633,296 + Echvi_1417 0.75 -0.9
1,633,296 + Echvi_1417 0.75 +0.3
1,633,305 + Echvi_1417 0.76 +1.6
1,633,328 + Echvi_1417 0.77 -0.8
1,633,328 + Echvi_1417 0.77 -0.1
1,633,333 + Echvi_1417 0.78 -1.3
1,633,338 + Echvi_1417 0.78 -0.8
1,633,338 + Echvi_1417 0.78 -0.2
1,633,338 + Echvi_1417 0.78 +0.7
1,633,341 + Echvi_1417 0.78 -0.9
1,633,347 + Echvi_1417 0.79 +1.0
1,633,402 - Echvi_1417 0.83 -0.2
1,633,402 - Echvi_1417 0.83 +0.7
1,633,468 + Echvi_1417 0.87 -0.0
1,633,469 - Echvi_1417 0.87 +0.8
1,633,513 - -0.9
1,633,534 + -0.1
1,633,534 + +0.2
1,633,602 - -0.5
1,633,625 + -0.3
1,633,626 - -1.8
1,633,629 + +0.8
1,633,630 - -0.7
1,633,857 - Echvi_1419 0.11 -1.5
1,633,916 + Echvi_1419 0.27 -2.2
1,633,925 + Echvi_1419 0.29 -0.6
1,633,925 + Echvi_1419 0.29 -0.6
1,633,925 + Echvi_1419 0.29 -0.3
1,633,926 - Echvi_1419 0.29 +0.6
1,633,926 - Echvi_1419 0.29 +1.2
1,633,987 - Echvi_1419 0.46 -0.2
1,634,006 + Echvi_1419 0.51 +0.5
1,634,088 - Echvi_1419 0.72 -1.1
1,634,116 - Echvi_1419 0.80 -1.1
1,634,187 + -1.1
1,634,187 + +0.7
1,634,188 - -0.0
1,634,188 - -0.1
1,634,196 + +0.2
1,634,279 + Echvi_1420 0.19 -0.5
1,634,279 + Echvi_1420 0.19 +1.1
1,634,279 + Echvi_1420 0.19 +1.2
1,634,280 - Echvi_1420 0.19 +0.6
1,634,280 - Echvi_1420 0.19 +0.7
1,634,280 - Echvi_1420 0.19 -0.8
1,634,280 - Echvi_1420 0.19 +1.9
1,634,280 - Echvi_1420 0.19 +1.2
1,634,394 + Echvi_1420 0.51 -0.0
1,634,394 + Echvi_1420 0.51 +0.6
1,634,395 - Echvi_1420 0.52 -0.3
1,634,399 - Echvi_1420 0.53 +0.6
1,634,502 - Echvi_1420 0.82 -1.1
1,634,506 + Echvi_1420 0.83 -1.9
1,634,507 - Echvi_1420 0.83 -1.1
1,634,543 - -0.1
1,634,594 - +0.6
1,634,606 + -0.2
1,634,614 + +1.1
1,634,615 - +0.4
1,634,619 + -0.6
1,634,620 - -0.7
1,634,650 + Echvi_1421 0.11 -0.4
1,634,651 - Echvi_1421 0.11 +0.5
1,634,707 + Echvi_1421 0.21 -0.2
1,634,708 - Echvi_1421 0.22 +0.2
1,634,720 - Echvi_1421 0.24 -0.7
1,634,827 + Echvi_1421 0.43 -0.0
1,634,955 - Echvi_1421 0.66 -0.1
1,634,987 + Echvi_1421 0.71 +1.2
1,634,988 - Echvi_1421 0.71 -0.1
1,634,991 + Echvi_1421 0.72 -0.8
1,634,991 + Echvi_1421 0.72 +2.2
1,634,991 + Echvi_1421 0.72 +0.7
1,635,024 + Echvi_1421 0.78 +0.2
1,635,024 + Echvi_1421 0.78 +0.4
1,635,025 - Echvi_1421 0.78 -1.1
1,635,025 - Echvi_1421 0.78 -0.4
1,635,025 - Echvi_1421 0.78 -0.9
1,635,026 + Echvi_1421 0.78 -0.1
1,635,027 - Echvi_1421 0.78 -1.6
1,635,027 - Echvi_1421 0.78 -1.3
1,635,027 - Echvi_1421 0.78 -2.7
1,635,060 + Echvi_1421 0.84 -0.2
1,635,060 + Echvi_1421 0.84 -0.6
1,635,141 + -0.6

Or see this region's nucleotide sequence