Experiment: D-Glucose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1417 and Echvi_1418 are separated by 14 nucleotides Echvi_1418 and Echvi_1419 overlap by 4 nucleotides Echvi_1419 and Echvi_1420 are separated by 19 nucleotides Echvi_1420 and Echvi_1421 are separated by 21 nucleotides Echvi_1421 and Echvi_1422 overlap by 8 nucleotides
Echvi_1417: Echvi_1417 - Fibrobacter succinogenes major domain (Fib_succ_major)., at 1,632,245 to 1,633,645
_1417
Echvi_1418: Echvi_1418 - hypothetical protein, at 1,633,660 to 1,633,818
_1418
Echvi_1419: Echvi_1419 - Predicted enzyme related to lactoylglutathione lyase, at 1,633,815 to 1,634,192
_1419
Echvi_1420: Echvi_1420 - hypothetical protein, at 1,634,212 to 1,634,565
_1420
Echvi_1421: Echvi_1421 - Dihydrofolate reductase, at 1,634,587 to 1,635,147
_1421
Echvi_1422: Echvi_1422 - hypothetical protein, at 1,635,140 to 1,635,664
_1422
Position (kb)
1633
1634
1635 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1632.826 kb on + strand, within Echvi_1417 at 1632.831 kb on + strand, within Echvi_1417 at 1632.831 kb on + strand, within Echvi_1417 at 1632.831 kb on + strand, within Echvi_1417 at 1632.831 kb on + strand, within Echvi_1417 at 1632.831 kb on + strand, within Echvi_1417 at 1632.832 kb on - strand, within Echvi_1417 at 1632.832 kb on - strand, within Echvi_1417 at 1632.832 kb on - strand, within Echvi_1417 at 1632.835 kb on + strand, within Echvi_1417 at 1632.892 kb on - strand, within Echvi_1417 at 1632.935 kb on + strand, within Echvi_1417 at 1632.985 kb on + strand, within Echvi_1417 at 1632.986 kb on - strand, within Echvi_1417 at 1633.024 kb on + strand, within Echvi_1417 at 1633.024 kb on + strand, within Echvi_1417 at 1633.027 kb on - strand, within Echvi_1417 at 1633.049 kb on + strand, within Echvi_1417 at 1633.124 kb on + strand, within Echvi_1417 at 1633.125 kb on - strand, within Echvi_1417 at 1633.128 kb on + strand, within Echvi_1417 at 1633.129 kb on - strand, within Echvi_1417 at 1633.129 kb on - strand, within Echvi_1417 at 1633.129 kb on - strand, within Echvi_1417 at 1633.129 kb on - strand, within Echvi_1417 at 1633.129 kb on - strand, within Echvi_1417 at 1633.129 kb on - strand, within Echvi_1417 at 1633.129 kb on - strand, within Echvi_1417 at 1633.130 kb on + strand, within Echvi_1417 at 1633.130 kb on + strand, within Echvi_1417 at 1633.130 kb on + strand, within Echvi_1417 at 1633.130 kb on + strand, within Echvi_1417 at 1633.130 kb on + strand, within Echvi_1417 at 1633.130 kb on + strand, within Echvi_1417 at 1633.130 kb on + strand, within Echvi_1417 at 1633.130 kb on + strand, within Echvi_1417 at 1633.130 kb on + strand, within Echvi_1417 at 1633.130 kb on + strand, within Echvi_1417 at 1633.130 kb on + strand, within Echvi_1417 at 1633.130 kb on + strand, within Echvi_1417 at 1633.130 kb on + strand, within Echvi_1417 at 1633.130 kb on + strand, within Echvi_1417 at 1633.131 kb on - strand, within Echvi_1417 at 1633.131 kb on - strand, within Echvi_1417 at 1633.131 kb on - strand, within Echvi_1417 at 1633.131 kb on - strand, within Echvi_1417 at 1633.131 kb on - strand, within Echvi_1417 at 1633.134 kb on + strand, within Echvi_1417 at 1633.137 kb on + strand, within Echvi_1417 at 1633.138 kb on - strand, within Echvi_1417 at 1633.138 kb on - strand, within Echvi_1417 at 1633.140 kb on + strand, within Echvi_1417 at 1633.140 kb on + strand, within Echvi_1417 at 1633.140 kb on + strand, within Echvi_1417 at 1633.140 kb on + strand, within Echvi_1417 at 1633.140 kb on + strand, within Echvi_1417 at 1633.141 kb on - strand, within Echvi_1417 at 1633.141 kb on - strand, within Echvi_1417 at 1633.197 kb on - strand, within Echvi_1417 at 1633.197 kb on - strand, within Echvi_1417 at 1633.245 kb on - strand, within Echvi_1417 at 1633.294 kb on + strand, within Echvi_1417 at 1633.294 kb on + strand, within Echvi_1417 at 1633.295 kb on - strand, within Echvi_1417 at 1633.295 kb on - strand, within Echvi_1417 at 1633.296 kb on + strand, within Echvi_1417 at 1633.296 kb on + strand, within Echvi_1417 at 1633.305 kb on + strand, within Echvi_1417 at 1633.328 kb on + strand, within Echvi_1417 at 1633.328 kb on + strand, within Echvi_1417 at 1633.333 kb on + strand, within Echvi_1417 at 1633.338 kb on + strand, within Echvi_1417 at 1633.338 kb on + strand, within Echvi_1417 at 1633.338 kb on + strand, within Echvi_1417 at 1633.341 kb on + strand, within Echvi_1417 at 1633.347 kb on + strand, within Echvi_1417 at 1633.402 kb on - strand, within Echvi_1417 at 1633.402 kb on - strand, within Echvi_1417 at 1633.468 kb on + strand, within Echvi_1417 at 1633.469 kb on - strand, within Echvi_1417 at 1633.513 kb on - strand at 1633.534 kb on + strand at 1633.534 kb on + strand at 1633.602 kb on - strand at 1633.625 kb on + strand at 1633.626 kb on - strand at 1633.629 kb on + strand at 1633.630 kb on - strand at 1633.857 kb on - strand, within Echvi_1419 at 1633.916 kb on + strand, within Echvi_1419 at 1633.925 kb on + strand, within Echvi_1419 at 1633.925 kb on + strand, within Echvi_1419 at 1633.925 kb on + strand, within Echvi_1419 at 1633.926 kb on - strand, within Echvi_1419 at 1633.926 kb on - strand, within Echvi_1419 at 1633.987 kb on - strand, within Echvi_1419 at 1634.006 kb on + strand, within Echvi_1419 at 1634.088 kb on - strand, within Echvi_1419 at 1634.116 kb on - strand, within Echvi_1419 at 1634.187 kb on + strand at 1634.187 kb on + strand at 1634.188 kb on - strand at 1634.188 kb on - strand at 1634.196 kb on + strand at 1634.279 kb on + strand, within Echvi_1420 at 1634.279 kb on + strand, within Echvi_1420 at 1634.279 kb on + strand, within Echvi_1420 at 1634.280 kb on - strand, within Echvi_1420 at 1634.280 kb on - strand, within Echvi_1420 at 1634.280 kb on - strand, within Echvi_1420 at 1634.280 kb on - strand, within Echvi_1420 at 1634.280 kb on - strand, within Echvi_1420 at 1634.394 kb on + strand, within Echvi_1420 at 1634.394 kb on + strand, within Echvi_1420 at 1634.395 kb on - strand, within Echvi_1420 at 1634.399 kb on - strand, within Echvi_1420 at 1634.502 kb on - strand, within Echvi_1420 at 1634.506 kb on + strand, within Echvi_1420 at 1634.507 kb on - strand, within Echvi_1420 at 1634.543 kb on - strand at 1634.594 kb on - strand at 1634.606 kb on + strand at 1634.614 kb on + strand at 1634.615 kb on - strand at 1634.619 kb on + strand at 1634.620 kb on - strand at 1634.650 kb on + strand, within Echvi_1421 at 1634.651 kb on - strand, within Echvi_1421 at 1634.707 kb on + strand, within Echvi_1421 at 1634.708 kb on - strand, within Echvi_1421 at 1634.720 kb on - strand, within Echvi_1421 at 1634.827 kb on + strand, within Echvi_1421 at 1634.955 kb on - strand, within Echvi_1421 at 1634.987 kb on + strand, within Echvi_1421 at 1634.988 kb on - strand, within Echvi_1421 at 1634.991 kb on + strand, within Echvi_1421 at 1634.991 kb on + strand, within Echvi_1421 at 1634.991 kb on + strand, within Echvi_1421 at 1635.024 kb on + strand, within Echvi_1421 at 1635.024 kb on + strand, within Echvi_1421 at 1635.025 kb on - strand, within Echvi_1421 at 1635.025 kb on - strand, within Echvi_1421 at 1635.025 kb on - strand, within Echvi_1421 at 1635.026 kb on + strand, within Echvi_1421 at 1635.027 kb on - strand, within Echvi_1421 at 1635.027 kb on - strand, within Echvi_1421 at 1635.027 kb on - strand, within Echvi_1421 at 1635.060 kb on + strand, within Echvi_1421 at 1635.060 kb on + strand, within Echvi_1421 at 1635.141 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 20mM (C) remove 1,632,826 + Echvi_1417 0.41 -1.5 1,632,831 + Echvi_1417 0.42 +0.2 1,632,831 + Echvi_1417 0.42 +0.2 1,632,831 + Echvi_1417 0.42 -0.2 1,632,831 + Echvi_1417 0.42 +1.2 1,632,831 + Echvi_1417 0.42 -0.1 1,632,832 - Echvi_1417 0.42 -1.2 1,632,832 - Echvi_1417 0.42 +0.5 1,632,832 - Echvi_1417 0.42 -0.9 1,632,835 + Echvi_1417 0.42 -0.6 1,632,892 - Echvi_1417 0.46 +0.9 1,632,935 + Echvi_1417 0.49 -1.5 1,632,985 + Echvi_1417 0.53 -1.4 1,632,986 - Echvi_1417 0.53 -0.1 1,633,024 + Echvi_1417 0.56 -0.0 1,633,024 + Echvi_1417 0.56 +0.2 1,633,027 - Echvi_1417 0.56 -0.9 1,633,049 + Echvi_1417 0.57 -1.4 1,633,124 + Echvi_1417 0.63 +0.2 1,633,125 - Echvi_1417 0.63 +0.7 1,633,128 + Echvi_1417 0.63 -0.1 1,633,129 - Echvi_1417 0.63 +0.0 1,633,129 - Echvi_1417 0.63 -0.9 1,633,129 - Echvi_1417 0.63 -0.7 1,633,129 - Echvi_1417 0.63 +0.1 1,633,129 - Echvi_1417 0.63 +1.1 1,633,129 - Echvi_1417 0.63 -0.7 1,633,129 - Echvi_1417 0.63 +1.2 1,633,130 + Echvi_1417 0.63 -0.6 1,633,130 + Echvi_1417 0.63 +1.0 1,633,130 + Echvi_1417 0.63 +0.3 1,633,130 + Echvi_1417 0.63 +0.7 1,633,130 + Echvi_1417 0.63 +0.9 1,633,130 + Echvi_1417 0.63 +0.6 1,633,130 + Echvi_1417 0.63 -0.2 1,633,130 + Echvi_1417 0.63 +0.2 1,633,130 + Echvi_1417 0.63 -0.6 1,633,130 + Echvi_1417 0.63 -0.3 1,633,130 + Echvi_1417 0.63 -0.7 1,633,130 + Echvi_1417 0.63 -0.2 1,633,130 + Echvi_1417 0.63 -1.5 1,633,130 + Echvi_1417 0.63 -0.3 1,633,131 - Echvi_1417 0.63 +0.4 1,633,131 - Echvi_1417 0.63 -1.1 1,633,131 - Echvi_1417 0.63 -0.2 1,633,131 - Echvi_1417 0.63 -0.2 1,633,131 - Echvi_1417 0.63 +0.2 1,633,134 + Echvi_1417 0.63 -1.3 1,633,137 + Echvi_1417 0.64 -0.8 1,633,138 - Echvi_1417 0.64 -0.0 1,633,138 - Echvi_1417 0.64 -1.2 1,633,140 + Echvi_1417 0.64 +0.0 1,633,140 + Echvi_1417 0.64 -1.8 1,633,140 + Echvi_1417 0.64 +2.6 1,633,140 + Echvi_1417 0.64 +0.2 1,633,140 + Echvi_1417 0.64 -0.5 1,633,141 - Echvi_1417 0.64 -1.3 1,633,141 - Echvi_1417 0.64 -0.1 1,633,197 - Echvi_1417 0.68 -0.5 1,633,197 - Echvi_1417 0.68 +0.6 1,633,245 - Echvi_1417 0.71 +0.5 1,633,294 + Echvi_1417 0.75 +1.2 1,633,294 + Echvi_1417 0.75 +0.5 1,633,295 - Echvi_1417 0.75 -0.8 1,633,295 - Echvi_1417 0.75 -0.8 1,633,296 + Echvi_1417 0.75 -0.9 1,633,296 + Echvi_1417 0.75 +0.3 1,633,305 + Echvi_1417 0.76 +1.6 1,633,328 + Echvi_1417 0.77 -0.8 1,633,328 + Echvi_1417 0.77 -0.1 1,633,333 + Echvi_1417 0.78 -1.3 1,633,338 + Echvi_1417 0.78 -0.8 1,633,338 + Echvi_1417 0.78 -0.2 1,633,338 + Echvi_1417 0.78 +0.7 1,633,341 + Echvi_1417 0.78 -0.9 1,633,347 + Echvi_1417 0.79 +1.0 1,633,402 - Echvi_1417 0.83 -0.2 1,633,402 - Echvi_1417 0.83 +0.7 1,633,468 + Echvi_1417 0.87 -0.0 1,633,469 - Echvi_1417 0.87 +0.8 1,633,513 - -0.9 1,633,534 + -0.1 1,633,534 + +0.2 1,633,602 - -0.5 1,633,625 + -0.3 1,633,626 - -1.8 1,633,629 + +0.8 1,633,630 - -0.7 1,633,857 - Echvi_1419 0.11 -1.5 1,633,916 + Echvi_1419 0.27 -2.2 1,633,925 + Echvi_1419 0.29 -0.6 1,633,925 + Echvi_1419 0.29 -0.6 1,633,925 + Echvi_1419 0.29 -0.3 1,633,926 - Echvi_1419 0.29 +0.6 1,633,926 - Echvi_1419 0.29 +1.2 1,633,987 - Echvi_1419 0.46 -0.2 1,634,006 + Echvi_1419 0.51 +0.5 1,634,088 - Echvi_1419 0.72 -1.1 1,634,116 - Echvi_1419 0.80 -1.1 1,634,187 + -1.1 1,634,187 + +0.7 1,634,188 - -0.0 1,634,188 - -0.1 1,634,196 + +0.2 1,634,279 + Echvi_1420 0.19 -0.5 1,634,279 + Echvi_1420 0.19 +1.1 1,634,279 + Echvi_1420 0.19 +1.2 1,634,280 - Echvi_1420 0.19 +0.6 1,634,280 - Echvi_1420 0.19 +0.7 1,634,280 - Echvi_1420 0.19 -0.8 1,634,280 - Echvi_1420 0.19 +1.9 1,634,280 - Echvi_1420 0.19 +1.2 1,634,394 + Echvi_1420 0.51 -0.0 1,634,394 + Echvi_1420 0.51 +0.6 1,634,395 - Echvi_1420 0.52 -0.3 1,634,399 - Echvi_1420 0.53 +0.6 1,634,502 - Echvi_1420 0.82 -1.1 1,634,506 + Echvi_1420 0.83 -1.9 1,634,507 - Echvi_1420 0.83 -1.1 1,634,543 - -0.1 1,634,594 - +0.6 1,634,606 + -0.2 1,634,614 + +1.1 1,634,615 - +0.4 1,634,619 + -0.6 1,634,620 - -0.7 1,634,650 + Echvi_1421 0.11 -0.4 1,634,651 - Echvi_1421 0.11 +0.5 1,634,707 + Echvi_1421 0.21 -0.2 1,634,708 - Echvi_1421 0.22 +0.2 1,634,720 - Echvi_1421 0.24 -0.7 1,634,827 + Echvi_1421 0.43 -0.0 1,634,955 - Echvi_1421 0.66 -0.1 1,634,987 + Echvi_1421 0.71 +1.2 1,634,988 - Echvi_1421 0.71 -0.1 1,634,991 + Echvi_1421 0.72 -0.8 1,634,991 + Echvi_1421 0.72 +2.2 1,634,991 + Echvi_1421 0.72 +0.7 1,635,024 + Echvi_1421 0.78 +0.2 1,635,024 + Echvi_1421 0.78 +0.4 1,635,025 - Echvi_1421 0.78 -1.1 1,635,025 - Echvi_1421 0.78 -0.4 1,635,025 - Echvi_1421 0.78 -0.9 1,635,026 + Echvi_1421 0.78 -0.1 1,635,027 - Echvi_1421 0.78 -1.6 1,635,027 - Echvi_1421 0.78 -1.3 1,635,027 - Echvi_1421 0.78 -2.7 1,635,060 + Echvi_1421 0.84 -0.2 1,635,060 + Echvi_1421 0.84 -0.6 1,635,141 + -0.6
Or see this region's nucleotide sequence