Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0085

Experiment: D-Glucose 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0084 and Echvi_0085 are separated by 11 nucleotidesEchvi_0085 and Echvi_0086 are separated by 49 nucleotides Echvi_0084: Echvi_0084 - Serine phosphatase RsbU, regulator of sigma subunit, at 84,556 to 85,767 _0084 Echvi_0085: Echvi_0085 - hypothetical protein, at 85,779 to 86,030 _0085 Echvi_0086: Echvi_0086 - Glycosyltransferases, probably involved in cell wall biogenesis, at 86,080 to 87,198 _0086 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 84.794 kb on - strandat 84.831 kb on + strand, within Echvi_0084at 84.835 kb on - strand, within Echvi_0084at 84.911 kb on + strand, within Echvi_0084at 84.932 kb on + strand, within Echvi_0084at 84.933 kb on - strand, within Echvi_0084at 84.936 kb on + strand, within Echvi_0084at 84.937 kb on - strand, within Echvi_0084at 84.938 kb on + strand, within Echvi_0084at 84.938 kb on + strand, within Echvi_0084at 84.938 kb on + strand, within Echvi_0084at 84.938 kb on + strand, within Echvi_0084at 84.939 kb on - strand, within Echvi_0084at 84.939 kb on - strand, within Echvi_0084at 84.960 kb on + strand, within Echvi_0084at 84.995 kb on + strand, within Echvi_0084at 84.995 kb on + strand, within Echvi_0084at 84.995 kb on + strand, within Echvi_0084at 85.052 kb on - strand, within Echvi_0084at 85.052 kb on - strand, within Echvi_0084at 85.158 kb on - strand, within Echvi_0084at 85.176 kb on + strand, within Echvi_0084at 85.176 kb on + strand, within Echvi_0084at 85.176 kb on + strand, within Echvi_0084at 85.179 kb on + strand, within Echvi_0084at 85.245 kb on + strand, within Echvi_0084at 85.245 kb on + strand, within Echvi_0084at 85.246 kb on - strand, within Echvi_0084at 85.246 kb on - strand, within Echvi_0084at 85.246 kb on - strand, within Echvi_0084at 85.246 kb on - strand, within Echvi_0084at 85.253 kb on - strand, within Echvi_0084at 85.298 kb on - strand, within Echvi_0084at 85.344 kb on + strand, within Echvi_0084at 85.376 kb on - strand, within Echvi_0084at 85.408 kb on + strand, within Echvi_0084at 85.408 kb on + strand, within Echvi_0084at 85.408 kb on + strand, within Echvi_0084at 85.426 kb on - strand, within Echvi_0084at 85.426 kb on - strand, within Echvi_0084at 85.432 kb on - strand, within Echvi_0084at 85.448 kb on + strand, within Echvi_0084at 85.452 kb on + strand, within Echvi_0084at 85.453 kb on - strand, within Echvi_0084at 85.473 kb on - strand, within Echvi_0084at 85.494 kb on + strand, within Echvi_0084at 85.607 kb on + strand, within Echvi_0084at 85.608 kb on - strand, within Echvi_0084at 85.626 kb on + strand, within Echvi_0084at 85.627 kb on - strand, within Echvi_0084at 85.647 kb on + strandat 85.660 kb on - strandat 85.729 kb on + strandat 85.730 kb on - strandat 85.787 kb on + strandat 85.787 kb on + strandat 85.788 kb on - strandat 85.828 kb on + strand, within Echvi_0085at 85.828 kb on + strand, within Echvi_0085at 85.829 kb on - strand, within Echvi_0085at 85.835 kb on + strand, within Echvi_0085at 85.835 kb on + strand, within Echvi_0085at 85.836 kb on - strand, within Echvi_0085at 85.836 kb on - strand, within Echvi_0085at 85.968 kb on + strand, within Echvi_0085at 85.969 kb on - strand, within Echvi_0085at 86.074 kb on + strandat 86.191 kb on + strandat 86.192 kb on - strand, within Echvi_0086at 86.199 kb on - strand, within Echvi_0086at 86.202 kb on + strand, within Echvi_0086at 86.202 kb on + strand, within Echvi_0086at 86.202 kb on + strand, within Echvi_0086at 86.203 kb on - strand, within Echvi_0086at 86.203 kb on - strand, within Echvi_0086at 86.203 kb on - strand, within Echvi_0086at 86.205 kb on + strand, within Echvi_0086at 86.205 kb on + strand, within Echvi_0086at 86.205 kb on + strand, within Echvi_0086at 86.229 kb on - strand, within Echvi_0086at 86.236 kb on + strand, within Echvi_0086at 86.239 kb on + strand, within Echvi_0086at 86.245 kb on + strand, within Echvi_0086at 86.256 kb on - strand, within Echvi_0086at 86.257 kb on + strand, within Echvi_0086at 86.257 kb on + strand, within Echvi_0086at 86.257 kb on + strand, within Echvi_0086at 86.258 kb on - strand, within Echvi_0086at 86.258 kb on - strand, within Echvi_0086at 86.258 kb on - strand, within Echvi_0086at 86.279 kb on - strand, within Echvi_0086at 86.338 kb on + strand, within Echvi_0086at 86.471 kb on + strand, within Echvi_0086at 86.515 kb on + strand, within Echvi_0086at 86.519 kb on + strand, within Echvi_0086at 86.519 kb on + strand, within Echvi_0086at 86.520 kb on - strand, within Echvi_0086at 86.520 kb on - strand, within Echvi_0086at 86.566 kb on + strand, within Echvi_0086at 86.566 kb on + strand, within Echvi_0086at 86.566 kb on + strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.569 kb on - strand, within Echvi_0086at 86.632 kb on - strand, within Echvi_0086at 86.823 kb on + strand, within Echvi_0086at 86.824 kb on - strand, within Echvi_0086at 86.857 kb on - strand, within Echvi_0086at 86.895 kb on + strand, within Echvi_0086at 86.896 kb on - strand, within Echvi_0086at 86.896 kb on - strand, within Echvi_0086at 86.902 kb on - strand, within Echvi_0086at 86.977 kb on - strand, within Echvi_0086

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20mM (C)
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84,794 - -0.8
84,831 + Echvi_0084 0.23 +0.1
84,835 - Echvi_0084 0.23 -1.0
84,911 + Echvi_0084 0.29 +0.2
84,932 + Echvi_0084 0.31 +0.2
84,933 - Echvi_0084 0.31 -0.4
84,936 + Echvi_0084 0.31 +1.4
84,937 - Echvi_0084 0.31 +0.1
84,938 + Echvi_0084 0.32 +0.2
84,938 + Echvi_0084 0.32 +0.0
84,938 + Echvi_0084 0.32 +0.9
84,938 + Echvi_0084 0.32 +0.9
84,939 - Echvi_0084 0.32 +0.3
84,939 - Echvi_0084 0.32 +1.9
84,960 + Echvi_0084 0.33 -0.2
84,995 + Echvi_0084 0.36 +1.1
84,995 + Echvi_0084 0.36 +1.1
84,995 + Echvi_0084 0.36 +1.5
85,052 - Echvi_0084 0.41 -0.4
85,052 - Echvi_0084 0.41 +0.7
85,158 - Echvi_0084 0.50 -1.0
85,176 + Echvi_0084 0.51 +0.6
85,176 + Echvi_0084 0.51 +2.1
85,176 + Echvi_0084 0.51 +3.9
85,179 + Echvi_0084 0.51 +0.1
85,245 + Echvi_0084 0.57 -0.1
85,245 + Echvi_0084 0.57 -1.2
85,246 - Echvi_0084 0.57 +1.0
85,246 - Echvi_0084 0.57 +1.1
85,246 - Echvi_0084 0.57 +0.1
85,246 - Echvi_0084 0.57 +2.1
85,253 - Echvi_0084 0.58 -0.5
85,298 - Echvi_0084 0.61 +0.1
85,344 + Echvi_0084 0.65 +0.9
85,376 - Echvi_0084 0.68 -0.8
85,408 + Echvi_0084 0.70 -1.1
85,408 + Echvi_0084 0.70 +0.5
85,408 + Echvi_0084 0.70 +0.3
85,426 - Echvi_0084 0.72 +1.3
85,426 - Echvi_0084 0.72 +1.1
85,432 - Echvi_0084 0.72 +0.3
85,448 + Echvi_0084 0.74 -0.4
85,452 + Echvi_0084 0.74 +0.4
85,453 - Echvi_0084 0.74 -1.3
85,473 - Echvi_0084 0.76 +0.5
85,494 + Echvi_0084 0.77 -1.2
85,607 + Echvi_0084 0.87 +1.1
85,608 - Echvi_0084 0.87 -0.8
85,626 + Echvi_0084 0.88 +0.7
85,627 - Echvi_0084 0.88 -0.4
85,647 + +0.8
85,660 - -0.6
85,729 + +2.1
85,730 - +1.0
85,787 + -0.1
85,787 + -0.1
85,788 - -1.0
85,828 + Echvi_0085 0.19 -2.1
85,828 + Echvi_0085 0.19 -1.2
85,829 - Echvi_0085 0.20 -1.1
85,835 + Echvi_0085 0.22 -1.9
85,835 + Echvi_0085 0.22 +1.1
85,836 - Echvi_0085 0.23 -0.5
85,836 - Echvi_0085 0.23 +0.2
85,968 + Echvi_0085 0.75 -0.1
85,969 - Echvi_0085 0.75 -1.4
86,074 + +0.5
86,191 + +0.2
86,192 - Echvi_0086 0.10 -0.5
86,199 - Echvi_0086 0.11 +0.4
86,202 + Echvi_0086 0.11 +1.1
86,202 + Echvi_0086 0.11 -0.2
86,202 + Echvi_0086 0.11 +0.3
86,203 - Echvi_0086 0.11 -1.3
86,203 - Echvi_0086 0.11 +0.9
86,203 - Echvi_0086 0.11 -0.4
86,205 + Echvi_0086 0.11 +1.2
86,205 + Echvi_0086 0.11 -1.1
86,205 + Echvi_0086 0.11 -0.2
86,229 - Echvi_0086 0.13 +0.2
86,236 + Echvi_0086 0.14 -1.9
86,239 + Echvi_0086 0.14 -0.5
86,245 + Echvi_0086 0.15 -2.5
86,256 - Echvi_0086 0.16 -1.1
86,257 + Echvi_0086 0.16 +0.3
86,257 + Echvi_0086 0.16 +2.2
86,257 + Echvi_0086 0.16 +1.0
86,258 - Echvi_0086 0.16 -1.3
86,258 - Echvi_0086 0.16 +0.5
86,258 - Echvi_0086 0.16 +1.1
86,279 - Echvi_0086 0.18 +0.6
86,338 + Echvi_0086 0.23 +2.1
86,471 + Echvi_0086 0.35 +0.5
86,515 + Echvi_0086 0.39 +0.6
86,519 + Echvi_0086 0.39 +1.1
86,519 + Echvi_0086 0.39 +0.9
86,520 - Echvi_0086 0.39 +0.2
86,520 - Echvi_0086 0.39 -0.7
86,566 + Echvi_0086 0.43 -1.0
86,566 + Echvi_0086 0.43 -1.1
86,566 + Echvi_0086 0.43 -1.1
86,567 - Echvi_0086 0.44 +1.1
86,567 - Echvi_0086 0.44 +3.1
86,567 - Echvi_0086 0.44 +1.1
86,567 - Echvi_0086 0.44 +0.4
86,567 - Echvi_0086 0.44 +0.5
86,567 - Echvi_0086 0.44 +0.7
86,567 - Echvi_0086 0.44 -1.5
86,569 - Echvi_0086 0.44 +2.3
86,632 - Echvi_0086 0.49 -0.2
86,823 + Echvi_0086 0.66 +0.8
86,824 - Echvi_0086 0.66 -0.8
86,857 - Echvi_0086 0.69 -1.6
86,895 + Echvi_0086 0.73 -0.3
86,896 - Echvi_0086 0.73 +0.3
86,896 - Echvi_0086 0.73 +0.2
86,902 - Echvi_0086 0.73 -0.5
86,977 - Echvi_0086 0.80 -0.2

Or see this region's nucleotide sequence