Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0081

Experiment: D-Glucose 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0080 and Echvi_0081 overlap by 4 nucleotidesEchvi_0081 and Echvi_0082 overlap by 1 nucleotides Echvi_0080: Echvi_0080 - L-asparaginases, type I, at 80,973 to 82,049 _0080 Echvi_0081: Echvi_0081 - hydrolase, TatD family, at 82,046 to 82,822 _0081 Echvi_0082: Echvi_0082 - Glycosyltransferases, probably involved in cell wall biogenesis, at 82,822 to 83,925 _0082 Position (kb) 82 83Strain fitness (log2 ratio) -2 -1 0 1 2 3at 81.057 kb on + strandat 81.057 kb on + strandat 81.197 kb on + strand, within Echvi_0080at 81.197 kb on + strand, within Echvi_0080at 81.197 kb on + strand, within Echvi_0080at 81.198 kb on - strand, within Echvi_0080at 81.198 kb on - strand, within Echvi_0080at 81.198 kb on - strand, within Echvi_0080at 81.269 kb on - strand, within Echvi_0080at 81.306 kb on - strand, within Echvi_0080at 81.385 kb on + strand, within Echvi_0080at 81.427 kb on + strand, within Echvi_0080at 81.427 kb on + strand, within Echvi_0080at 81.427 kb on + strand, within Echvi_0080at 81.428 kb on - strand, within Echvi_0080at 81.431 kb on + strand, within Echvi_0080at 81.434 kb on - strand, within Echvi_0080at 81.434 kb on - strand, within Echvi_0080at 81.539 kb on + strand, within Echvi_0080at 81.539 kb on + strand, within Echvi_0080at 81.540 kb on - strand, within Echvi_0080at 81.546 kb on - strand, within Echvi_0080at 81.552 kb on + strand, within Echvi_0080at 81.553 kb on - strand, within Echvi_0080at 81.554 kb on + strand, within Echvi_0080at 81.554 kb on + strand, within Echvi_0080at 81.555 kb on - strand, within Echvi_0080at 81.600 kb on + strand, within Echvi_0080at 81.737 kb on + strand, within Echvi_0080at 81.737 kb on + strand, within Echvi_0080at 81.737 kb on + strand, within Echvi_0080at 81.738 kb on - strand, within Echvi_0080at 81.738 kb on - strand, within Echvi_0080at 81.756 kb on + strand, within Echvi_0080at 81.769 kb on + strand, within Echvi_0080at 81.770 kb on - strand, within Echvi_0080at 81.770 kb on - strand, within Echvi_0080at 81.770 kb on - strand, within Echvi_0080at 81.770 kb on - strand, within Echvi_0080at 81.787 kb on + strand, within Echvi_0080at 81.787 kb on + strand, within Echvi_0080at 81.789 kb on + strand, within Echvi_0080at 81.789 kb on + strand, within Echvi_0080at 81.789 kb on + strand, within Echvi_0080at 81.789 kb on + strand, within Echvi_0080at 81.789 kb on + strand, within Echvi_0080at 81.789 kb on + strand, within Echvi_0080at 81.790 kb on - strand, within Echvi_0080at 81.790 kb on - strand, within Echvi_0080at 81.790 kb on - strand, within Echvi_0080at 81.790 kb on - strand, within Echvi_0080at 81.790 kb on - strand, within Echvi_0080at 81.790 kb on - strand, within Echvi_0080at 81.790 kb on - strand, within Echvi_0080at 81.790 kb on - strand, within Echvi_0080at 81.794 kb on + strand, within Echvi_0080at 81.794 kb on + strand, within Echvi_0080at 81.794 kb on + strand, within Echvi_0080at 81.796 kb on + strand, within Echvi_0080at 81.796 kb on + strand, within Echvi_0080at 81.796 kb on + strand, within Echvi_0080at 81.797 kb on - strand, within Echvi_0080at 81.836 kb on + strand, within Echvi_0080at 81.836 kb on + strand, within Echvi_0080at 81.837 kb on - strand, within Echvi_0080at 81.876 kb on - strand, within Echvi_0080at 81.909 kb on + strand, within Echvi_0080at 81.952 kb on + strandat 81.952 kb on + strandat 81.953 kb on - strandat 81.979 kb on + strandat 81.979 kb on + strandat 81.979 kb on + strandat 81.979 kb on + strandat 81.980 kb on - strandat 81.980 kb on - strandat 81.980 kb on - strandat 81.980 kb on - strandat 81.980 kb on - strandat 81.980 kb on - strandat 81.980 kb on - strandat 81.980 kb on - strandat 82.023 kb on - strandat 82.026 kb on + strandat 82.088 kb on - strandat 82.114 kb on + strandat 82.114 kb on + strandat 82.114 kb on + strandat 82.114 kb on + strandat 82.145 kb on + strand, within Echvi_0081at 82.146 kb on - strand, within Echvi_0081at 82.156 kb on + strand, within Echvi_0081at 82.156 kb on + strand, within Echvi_0081at 82.159 kb on - strand, within Echvi_0081at 82.203 kb on + strand, within Echvi_0081at 82.203 kb on + strand, within Echvi_0081at 82.226 kb on + strand, within Echvi_0081at 82.226 kb on + strand, within Echvi_0081at 82.282 kb on + strand, within Echvi_0081at 82.295 kb on + strand, within Echvi_0081at 82.295 kb on + strand, within Echvi_0081at 82.526 kb on + strand, within Echvi_0081at 82.526 kb on + strandat 82.527 kb on - strand, within Echvi_0081at 82.590 kb on + strand, within Echvi_0081at 82.590 kb on + strand, within Echvi_0081at 82.590 kb on + strand, within Echvi_0081at 82.647 kb on - strand, within Echvi_0081at 82.707 kb on - strand, within Echvi_0081at 82.720 kb on - strand, within Echvi_0081at 82.791 kb on + strandat 82.792 kb on - strandat 82.792 kb on - strandat 82.793 kb on + strandat 82.793 kb on + strandat 82.794 kb on - strandat 82.794 kb on - strandat 82.795 kb on + strandat 82.795 kb on + strandat 82.795 kb on + strandat 82.796 kb on - strandat 82.814 kb on - strandat 82.826 kb on + strandat 82.826 kb on + strandat 82.826 kb on + strandat 82.826 kb on + strandat 82.827 kb on - strandat 82.827 kb on - strandat 82.868 kb on + strandat 82.874 kb on - strandat 82.894 kb on + strandat 82.894 kb on + strandat 83.025 kb on + strand, within Echvi_0082at 83.038 kb on + strand, within Echvi_0082at 83.149 kb on + strand, within Echvi_0082at 83.253 kb on + strand, within Echvi_0082at 83.316 kb on + strand, within Echvi_0082at 83.317 kb on - strand, within Echvi_0082at 83.348 kb on - strand, within Echvi_0082at 83.348 kb on - strand, within Echvi_0082at 83.348 kb on - strand, within Echvi_0082at 83.379 kb on + strand, within Echvi_0082at 83.379 kb on + strand, within Echvi_0082at 83.379 kb on + strand, within Echvi_0082at 83.379 kb on + strand, within Echvi_0082at 83.380 kb on - strand, within Echvi_0082at 83.444 kb on - strand, within Echvi_0082at 83.467 kb on - strand, within Echvi_0082at 83.467 kb on - strand, within Echvi_0082at 83.467 kb on - strand, within Echvi_0082at 83.467 kb on - strand, within Echvi_0082at 83.468 kb on + strand, within Echvi_0082at 83.597 kb on + strand, within Echvi_0082at 83.597 kb on + strand, within Echvi_0082at 83.698 kb on + strand, within Echvi_0082at 83.699 kb on - strand, within Echvi_0082at 83.699 kb on - strand, within Echvi_0082at 83.721 kb on - strand, within Echvi_0082at 83.765 kb on - strand, within Echvi_0082at 83.785 kb on + strand, within Echvi_0082

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20mM (C)
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81,057 + -0.2
81,057 + -1.3
81,197 + Echvi_0080 0.21 -0.1
81,197 + Echvi_0080 0.21 -0.2
81,197 + Echvi_0080 0.21 -0.3
81,198 - Echvi_0080 0.21 -0.6
81,198 - Echvi_0080 0.21 +0.1
81,198 - Echvi_0080 0.21 -0.2
81,269 - Echvi_0080 0.27 +1.1
81,306 - Echvi_0080 0.31 -0.5
81,385 + Echvi_0080 0.38 +1.4
81,427 + Echvi_0080 0.42 -2.7
81,427 + Echvi_0080 0.42 -0.5
81,427 + Echvi_0080 0.42 -0.7
81,428 - Echvi_0080 0.42 +0.3
81,431 + Echvi_0080 0.43 +2.9
81,434 - Echvi_0080 0.43 +0.1
81,434 - Echvi_0080 0.43 +1.1
81,539 + Echvi_0080 0.53 +0.5
81,539 + Echvi_0080 0.53 -0.5
81,540 - Echvi_0080 0.53 +1.3
81,546 - Echvi_0080 0.53 -0.4
81,552 + Echvi_0080 0.54 -0.4
81,553 - Echvi_0080 0.54 -0.3
81,554 + Echvi_0080 0.54 +0.4
81,554 + Echvi_0080 0.54 +0.5
81,555 - Echvi_0080 0.54 -0.2
81,600 + Echvi_0080 0.58 +0.8
81,737 + Echvi_0080 0.71 +0.4
81,737 + Echvi_0080 0.71 +1.3
81,737 + Echvi_0080 0.71 +0.0
81,738 - Echvi_0080 0.71 -1.4
81,738 - Echvi_0080 0.71 +1.4
81,756 + Echvi_0080 0.73 +0.9
81,769 + Echvi_0080 0.74 +0.5
81,770 - Echvi_0080 0.74 +0.1
81,770 - Echvi_0080 0.74 -1.2
81,770 - Echvi_0080 0.74 -1.9
81,770 - Echvi_0080 0.74 +0.9
81,787 + Echvi_0080 0.76 -1.9
81,787 + Echvi_0080 0.76 +1.4
81,789 + Echvi_0080 0.76 -1.7
81,789 + Echvi_0080 0.76 -0.1
81,789 + Echvi_0080 0.76 -0.5
81,789 + Echvi_0080 0.76 +0.1
81,789 + Echvi_0080 0.76 -0.7
81,789 + Echvi_0080 0.76 +0.3
81,790 - Echvi_0080 0.76 -0.4
81,790 - Echvi_0080 0.76 -1.0
81,790 - Echvi_0080 0.76 +0.7
81,790 - Echvi_0080 0.76 -0.7
81,790 - Echvi_0080 0.76 -0.9
81,790 - Echvi_0080 0.76 -1.9
81,790 - Echvi_0080 0.76 -2.1
81,790 - Echvi_0080 0.76 -2.7
81,794 + Echvi_0080 0.76 +0.1
81,794 + Echvi_0080 0.76 +0.0
81,794 + Echvi_0080 0.76 -0.2
81,796 + Echvi_0080 0.76 +1.4
81,796 + Echvi_0080 0.76 -0.2
81,796 + Echvi_0080 0.76 +0.3
81,797 - Echvi_0080 0.77 -0.9
81,836 + Echvi_0080 0.80 -1.5
81,836 + Echvi_0080 0.80 +1.3
81,837 - Echvi_0080 0.80 +1.6
81,876 - Echvi_0080 0.84 -1.0
81,909 + Echvi_0080 0.87 -0.2
81,952 + -1.4
81,952 + -1.5
81,953 - +0.0
81,979 + +0.6
81,979 + +1.1
81,979 + +0.9
81,979 + +0.1
81,980 - +0.8
81,980 - -0.3
81,980 - +2.1
81,980 - -0.6
81,980 - +0.3
81,980 - -2.0
81,980 - -0.2
81,980 - -0.2
82,023 - -1.3
82,026 + -2.2
82,088 - -0.3
82,114 + -0.5
82,114 + +0.9
82,114 + +1.2
82,114 + -1.5
82,145 + Echvi_0081 0.13 -1.3
82,146 - Echvi_0081 0.13 -1.4
82,156 + Echvi_0081 0.14 +0.8
82,156 + Echvi_0081 0.14 +1.1
82,159 - Echvi_0081 0.15 -0.1
82,203 + Echvi_0081 0.20 -0.5
82,203 + Echvi_0081 0.20 -0.9
82,226 + Echvi_0081 0.23 -0.8
82,226 + Echvi_0081 0.23 -0.1
82,282 + Echvi_0081 0.30 -1.9
82,295 + Echvi_0081 0.32 +1.9
82,295 + Echvi_0081 0.32 -0.8
82,526 + Echvi_0081 0.62 +0.5
82,526 + -1.5
82,527 - Echvi_0081 0.62 +1.1
82,590 + Echvi_0081 0.70 -0.2
82,590 + Echvi_0081 0.70 -1.7
82,590 + Echvi_0081 0.70 -0.7
82,647 - Echvi_0081 0.77 -1.2
82,707 - Echvi_0081 0.85 -1.5
82,720 - Echvi_0081 0.87 -0.7
82,791 + -0.5
82,792 - -0.5
82,792 - +1.1
82,793 + +1.4
82,793 + +2.1
82,794 - -0.9
82,794 - -0.0
82,795 + +0.8
82,795 + -0.4
82,795 + -0.4
82,796 - -2.6
82,814 - +1.4
82,826 + -0.2
82,826 + -1.6
82,826 + +1.0
82,826 + -0.4
82,827 - +0.3
82,827 - +0.8
82,868 + +1.1
82,874 - -0.3
82,894 + -1.5
82,894 + +0.2
83,025 + Echvi_0082 0.18 +0.7
83,038 + Echvi_0082 0.20 -2.6
83,149 + Echvi_0082 0.30 -0.1
83,253 + Echvi_0082 0.39 +1.3
83,316 + Echvi_0082 0.45 +0.1
83,317 - Echvi_0082 0.45 -0.1
83,348 - Echvi_0082 0.48 +1.0
83,348 - Echvi_0082 0.48 +0.1
83,348 - Echvi_0082 0.48 +1.1
83,379 + Echvi_0082 0.50 +0.8
83,379 + Echvi_0082 0.50 +0.7
83,379 + Echvi_0082 0.50 +0.4
83,379 + Echvi_0082 0.50 -0.3
83,380 - Echvi_0082 0.51 -0.5
83,444 - Echvi_0082 0.56 -0.1
83,467 - Echvi_0082 0.58 -0.1
83,467 - Echvi_0082 0.58 +0.9
83,467 - Echvi_0082 0.58 +0.2
83,467 - Echvi_0082 0.58 +0.5
83,468 + Echvi_0082 0.59 +0.1
83,597 + Echvi_0082 0.70 -1.2
83,597 + Echvi_0082 0.70 +0.2
83,698 + Echvi_0082 0.79 -0.0
83,699 - Echvi_0082 0.79 +0.3
83,699 - Echvi_0082 0.79 -1.7
83,721 - Echvi_0082 0.81 +0.1
83,765 - Echvi_0082 0.85 +0.8
83,785 + Echvi_0082 0.87 +0.4

Or see this region's nucleotide sequence