Strain Fitness in Agrobacterium fabrum C58 around Atu4360

Experiment: R2A with nitrite 9 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 9 mM
1,495,729	+				-1.1
1,495,792	+				+0.1
1,495,792	+				+1.0
1,495,802	-				-0.5
1,495,830	+				-0.1
1,495,838	-				+0.2
1,495,840	+				+0.1
1,495,848	-				-1.5
1,495,874	+		Atu4359	0.11	+0.4
1,495,874	+		Atu4359	0.11	+0.3
1,496,107	-		Atu4359	0.39	+0.3
1,496,129	-		Atu4359	0.42	-1.4
1,496,195	-		Atu4359	0.50	+0.3
1,496,287	+		Atu4359	0.61	+0.1
1,496,412	-		Atu4359	0.76	-0.2
1,496,516	+		Atu4359	0.89	+0.5
1,496,526	+				+0.1
1,496,526	+				+0.0
1,496,526	+				+1.0
1,496,526	+				-0.8
1,496,534	-				+0.3
1,496,552	-				-0.4
1,496,745	-		Atu4360	0.16	+1.3
1,496,802	+		Atu4360	0.22	+0.5
1,496,802	+		Atu4360	0.22	+1.2
1,496,824	-		Atu4360	0.24	-0.3
1,496,959	-		Atu4360	0.39	+0.7
1,497,300	-		Atu4360	0.77	+0.3
1,497,436	+				+1.0
1,497,531	-				-0.1
1,497,664	-				+0.3
1,497,678	+				+0.9
1,497,705	-				-1.2
1,497,787	+		Atu4361	0.13	-0.3
1,497,797	-		Atu4361	0.14	+0.5
1,497,877	+		Atu4361	0.21	-1.4
1,497,970	+		Atu4361	0.28	+1.0
1,498,115	+		Atu4361	0.40	+0.3
1,498,123	+		Atu4361	0.41	+0.8
1,498,212	-		Atu4361	0.48	+0.0
1,498,212	-		Atu4361	0.48	+0.7
1,498,271	-		Atu4361	0.53	-0.1
1,498,315	+		Atu4361	0.56	-2.1
1,498,344	-		Atu4361	0.59	+0.1
1,498,349	+		Atu4361	0.59	+0.8
1,498,351	+		Atu4361	0.59	+0.3
1,498,359	-		Atu4361	0.60	-0.7
1,498,390	+		Atu4361	0.62	+0.9
1,498,398	-		Atu4361	0.63	+0.4