Experiment: R2A with nitrite 9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3391 and Atu3392 are separated by 113 nucleotides Atu3392 and Atu3393 are separated by 176 nucleotides Atu3393 and Atu3394 overlap by 4 nucleotides
Atu3391: Atu3391 - ABC transporter substrate-binding protein, at 435,428 to 436,561
Atu3391
Atu3392: Atu3392 - methyltransferase, at 436,675 to 437,499
Atu3392
Atu3393: Atu3393 - pseudoazurin, at 437,676 to 438,116
Atu3393
Atu3394: Atu3394 - iron ABC transporter ATPase, at 438,113 to 438,913
Atu3394
Position (kb) 436
437
438 Strain fitness (log2 ratio) -2
-1
0
1 at 435.695 kb on + strand, within Atu3391 at 435.703 kb on - strand, within Atu3391 at 435.712 kb on + strand, within Atu3391 at 435.739 kb on + strand, within Atu3391 at 435.739 kb on + strand, within Atu3391 at 435.739 kb on + strand, within Atu3391 at 435.747 kb on - strand, within Atu3391 at 436.066 kb on + strand, within Atu3391 at 436.236 kb on - strand, within Atu3391 at 436.347 kb on - strand, within Atu3391 at 436.357 kb on - strand, within Atu3391 at 436.377 kb on - strand, within Atu3391 at 436.464 kb on + strand at 436.495 kb on + strand at 436.530 kb on - strand at 436.573 kb on + strand at 436.586 kb on - strand at 436.588 kb on - strand at 436.664 kb on + strand at 436.722 kb on + strand at 436.814 kb on + strand, within Atu3392 at 436.924 kb on + strand, within Atu3392 at 436.924 kb on + strand, within Atu3392 at 436.932 kb on - strand, within Atu3392 at 436.932 kb on - strand, within Atu3392 at 436.942 kb on - strand, within Atu3392 at 436.946 kb on + strand, within Atu3392 at 437.075 kb on - strand, within Atu3392 at 437.229 kb on - strand, within Atu3392 at 437.451 kb on + strand at 437.451 kb on + strand at 437.488 kb on + strand at 437.496 kb on - strand at 437.543 kb on + strand at 437.548 kb on + strand at 437.548 kb on + strand at 437.548 kb on + strand at 437.551 kb on - strand at 437.607 kb on - strand at 437.609 kb on + strand at 437.612 kb on - strand at 437.617 kb on - strand at 437.617 kb on - strand at 437.732 kb on - strand, within Atu3393 at 437.781 kb on - strand, within Atu3393 at 437.793 kb on + strand, within Atu3393 at 437.808 kb on - strand, within Atu3393 at 438.070 kb on + strand, within Atu3393 at 438.088 kb on - strand at 438.107 kb on - strand at 438.292 kb on + strand, within Atu3394
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrite 9 mM remove 435,695 + Atu3391 0.24 -1.0 435,703 - Atu3391 0.24 -0.1 435,712 + Atu3391 0.25 +0.0 435,739 + Atu3391 0.27 -0.2 435,739 + Atu3391 0.27 -0.0 435,739 + Atu3391 0.27 +0.1 435,747 - Atu3391 0.28 -0.1 436,066 + Atu3391 0.56 -0.1 436,236 - Atu3391 0.71 +0.2 436,347 - Atu3391 0.81 -0.3 436,357 - Atu3391 0.82 +0.8 436,377 - Atu3391 0.84 -0.7 436,464 + +0.1 436,495 + +0.4 436,530 - -0.4 436,573 + +0.0 436,586 - -0.1 436,588 - +0.8 436,664 + -0.0 436,722 + -0.5 436,814 + Atu3392 0.17 -0.3 436,924 + Atu3392 0.30 -1.7 436,924 + Atu3392 0.30 -1.7 436,932 - Atu3392 0.31 -0.9 436,932 - Atu3392 0.31 -0.9 436,942 - Atu3392 0.32 -0.7 436,946 + Atu3392 0.33 -1.8 437,075 - Atu3392 0.48 -0.1 437,229 - Atu3392 0.67 +0.2 437,451 + -1.2 437,451 + +0.1 437,488 + +0.8 437,496 - -1.2 437,543 + +0.2 437,548 + -0.1 437,548 + +1.1 437,548 + -0.8 437,551 - -0.5 437,607 - +0.2 437,609 + +0.5 437,612 - +0.6 437,617 - +0.6 437,617 - +0.4 437,732 - Atu3393 0.13 -0.0 437,781 - Atu3393 0.24 -0.5 437,793 + Atu3393 0.27 -0.1 437,808 - Atu3393 0.30 +0.5 438,070 + Atu3393 0.89 +0.7 438,088 - -0.2 438,107 - -0.8 438,292 + Atu3394 0.22 +0.9
Or see this region's nucleotide sequence