Strain Fitness in Agrobacterium fabrum C58 around Atu2786

Experiment: R2A with nitrite 9 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 9 mM
2,788,569	-				-0.2
2,789,466	+				+0.2
2,789,574	+				+1.3
2,789,574	+				+0.1
2,789,587	-				-0.2
2,789,654	-		Atu2786	0.20	-0.6
2,789,693	-		Atu2786	0.29	-0.9
2,789,764	-		Atu2786	0.45	-1.1
2,789,776	+		Atu2786	0.47	-0.5
2,789,897	-		Atu2786	0.75	-0.4
2,789,900	+		Atu2786	0.76	-1.2
2,789,943	-		Atu2786	0.85	-0.4
2,789,979	+				-0.3
2,790,030	-				-0.1
2,790,118	+		Atu2787	0.45	+0.4
2,790,163	-		Atu2787	0.67	+0.5
2,790,224	+				+0.0
2,790,278	+				+1.5
2,790,344	-		Atu2788	0.13	+0.0
2,790,438	-		Atu2788	0.24	-0.9
2,790,448	-		Atu2788	0.25	+0.1
2,790,453	-		Atu2788	0.25	-0.7
2,790,592	-		Atu2788	0.41	+0.4
2,790,609	-		Atu2788	0.43	-0.5
2,790,718	+		Atu2788	0.55	-0.8
2,790,718	+		Atu2788	0.55	+0.4
2,790,843	+		Atu2788	0.69	-0.2
2,790,873	+		Atu2788	0.73	+0.0