Strain Fitness in Agrobacterium fabrum C58 around Atu1247

Experiment: R2A with nitrite 9 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 9 mM
1,235,577	-		Atu1245	0.66	+0.0
1,235,683	+		Atu1245	0.77	-0.3
1,235,683	-		Atu1245	0.77	+1.1
1,235,781	+		Atu1245	0.87	+0.8
1,235,789	-		Atu1245	0.88	-0.0
1,235,816	+				+1.4
1,235,833	+				-0.4
1,235,875	+				+0.0
1,237,236	+				+0.2
1,237,370	-		Atu1248	0.18	-0.0
1,237,372	+		Atu1248	0.18	+0.6
1,237,380	-		Atu1248	0.19	-0.6
1,237,399	+		Atu1248	0.21	-0.5
1,237,399	-		Atu1248	0.21	+0.1
1,237,407	-		Atu1248	0.22	-0.2
1,237,407	-		Atu1248	0.22	-0.1
1,237,412	-		Atu1248	0.23	+0.2
1,237,461	+		Atu1248	0.29	+0.6
1,237,501	-		Atu1248	0.33	+0.2
1,237,514	-		Atu1248	0.35	+0.2
1,237,538	+		Atu1248	0.38	-0.1
1,237,538	+		Atu1248	0.38	+1.0
1,237,538	+		Atu1248	0.38	+0.0
1,237,538	+		Atu1248	0.38	+0.1
1,237,540	+		Atu1248	0.38	-0.4
1,237,546	-		Atu1248	0.39	-0.2
1,237,546	-		Atu1248	0.39	-0.5
1,237,546	-		Atu1248	0.39	+0.7
1,237,548	-		Atu1248	0.39	+0.1
1,237,557	+		Atu1248	0.40	-0.1
1,237,558	+		Atu1248	0.40	+0.3
1,237,590	+		Atu1248	0.44	-0.2
1,237,590	+		Atu1248	0.44	-0.5
1,237,590	+		Atu1248	0.44	+0.4
1,237,590	+		Atu1248	0.44	+0.9
1,237,612	+		Atu1248	0.47	+1.2
1,237,612	+		Atu1248	0.47	-0.0
1,237,719	+		Atu1248	0.59	-0.5
1,237,727	-		Atu1248	0.60	-0.3
1,237,761	+		Atu1248	0.65	-1.0
1,237,787	-		Atu1248	0.68	+1.4
1,237,787	-		Atu1248	0.68	+0.2
1,237,793	+		Atu1248	0.68	-0.2
1,237,793	+		Atu1248	0.68	-0.2
1,237,859	-		Atu1248	0.76	-0.1
1,237,935	-		Atu1248	0.85	+0.1