Strain Fitness in Agrobacterium fabrum C58 around Atu1246

Experiment: R2A with nitrite 9 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 9 mM
1,235,094	-		Atu1245	0.15	+0.7
1,235,109	-		Atu1245	0.17	+0.9
1,235,211	+		Atu1245	0.27	-1.5
1,235,305	+		Atu1245	0.37	-0.6
1,235,374	+		Atu1245	0.45	+0.5
1,235,428	-		Atu1245	0.50	+1.0
1,235,503	+		Atu1245	0.58	-0.3
1,235,577	-		Atu1245	0.66	+0.0
1,235,683	+		Atu1245	0.77	-0.3
1,235,683	-		Atu1245	0.77	+1.1
1,235,781	+		Atu1245	0.87	+0.8
1,235,789	-		Atu1245	0.88	-0.0
1,235,816	+				+1.4
1,235,833	+				-0.4
1,235,875	+				+0.0
1,237,236	+				+0.2
1,237,370	-		Atu1248	0.18	-0.0
1,237,372	+		Atu1248	0.18	+0.6
1,237,380	-		Atu1248	0.19	-0.6
1,237,399	+		Atu1248	0.21	-0.5
1,237,399	-		Atu1248	0.21	+0.1
1,237,407	-		Atu1248	0.22	-0.2
1,237,407	-		Atu1248	0.22	-0.1
1,237,412	-		Atu1248	0.23	+0.2
1,237,461	+		Atu1248	0.29	+0.6
1,237,501	-		Atu1248	0.33	+0.2