Strain Fitness in Agrobacterium fabrum C58 around Atu1243

Experiment: R2A with nitrite 9 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 9 mM
1,232,104	+		Atu1242	0.11	-1.1
1,232,104	+		Atu1242	0.11	-0.7
1,232,104	+		Atu1242	0.11	+0.3
1,232,104	+		Atu1242	0.11	+0.8
1,232,104	+		Atu1242	0.11	+0.6
1,232,112	-		Atu1242	0.12	-1.5
1,232,112	-		Atu1242	0.12	-1.0
1,232,112	-		Atu1242	0.12	+0.1
1,232,112	-		Atu1242	0.12	-0.5
1,232,112	-		Atu1242	0.12	-0.1
1,232,278	-		Atu1242	0.27	-0.2
1,232,295	-		Atu1242	0.28	-0.4
1,232,370	+		Atu1242	0.35	-1.9
1,232,652	-		Atu1242	0.60	-1.8
1,232,653	+		Atu1242	0.60	-1.2
1,232,738	-		Atu1242	0.68	+0.2
1,232,870	+		Atu1242	0.80	-0.2
1,232,909	+		Atu1242	0.83	+0.2
1,233,001	+				+1.4
1,233,008	+				-0.4
1,233,100	-				+1.3
1,233,123	+				+0.1
1,233,123	+				-0.3
1,233,131	-				+0.2
1,233,131	-				+0.6
1,233,266	+		Atu1243	0.19	-0.2
1,233,330	+		Atu1243	0.27	-1.3
1,233,484	+		Atu1243	0.45	-0.2
1,233,486	-		Atu1243	0.45	-0.1
1,233,504	+		Atu1243	0.47	+0.4
1,233,535	-		Atu1243	0.51	-0.1
1,233,540	-		Atu1243	0.52	+0.1
1,233,618	-		Atu1243	0.61	-0.6
1,233,671	+		Atu1243	0.67	+0.3
1,233,674	-		Atu1243	0.67	-0.6
1,233,696	-		Atu1243	0.70	-0.5
1,233,704	-		Atu1243	0.71	-0.5
1,233,750	-		Atu1243	0.76	-0.4
1,233,888	-				+1.4