Experiment: R2A with nitrite 9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0893 and Atu0894 overlap by 8 nucleotides Atu0894 and Atu0895 are separated by 241 nucleotides
Atu0893: Atu0893 - ABC transporter, nucleotide binding/ATPase protein, at 883,625 to 884,722
Atu0893
Atu0894: Atu0894 - ABC transporter, membrane spanning protein, at 884,715 to 885,623
Atu0894
Atu0895: Atu0895 - ABC transporter, substrate binding protein, at 885,865 to 886,875
Atu0895
Position (kb) 884
885
886 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 883.718 kb on - strand at 883.819 kb on - strand, within Atu0893 at 883.845 kb on + strand, within Atu0893 at 883.853 kb on - strand, within Atu0893 at 883.977 kb on - strand, within Atu0893 at 884.040 kb on + strand, within Atu0893 at 884.119 kb on - strand, within Atu0893 at 884.188 kb on + strand, within Atu0893 at 884.257 kb on + strand, within Atu0893 at 884.257 kb on + strand, within Atu0893 at 884.319 kb on + strand, within Atu0893 at 884.398 kb on - strand, within Atu0893 at 884.587 kb on - strand, within Atu0893 at 884.595 kb on - strand, within Atu0893 at 884.599 kb on + strand, within Atu0893 at 884.607 kb on - strand, within Atu0893 at 884.607 kb on - strand, within Atu0893 at 884.623 kb on + strand at 884.623 kb on + strand at 884.629 kb on - strand at 884.720 kb on - strand at 884.801 kb on + strand at 884.809 kb on - strand, within Atu0894 at 884.893 kb on - strand, within Atu0894 at 884.952 kb on + strand, within Atu0894 at 885.098 kb on - strand, within Atu0894 at 885.122 kb on - strand, within Atu0894 at 885.171 kb on + strand, within Atu0894 at 885.502 kb on + strand, within Atu0894 at 885.568 kb on - strand at 885.607 kb on + strand at 885.669 kb on - strand at 885.683 kb on - strand at 885.684 kb on + strand at 885.775 kb on + strand at 885.806 kb on - strand at 885.829 kb on - strand at 885.996 kb on - strand, within Atu0895 at 886.002 kb on - strand, within Atu0895 at 886.191 kb on + strand, within Atu0895 at 886.345 kb on - strand, within Atu0895 at 886.346 kb on + strand, within Atu0895 at 886.559 kb on + strand, within Atu0895
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrite 9 mM remove 883,718 - +1.4 883,819 - Atu0893 0.18 +0.1 883,845 + Atu0893 0.20 +1.8 883,853 - Atu0893 0.21 +0.7 883,977 - Atu0893 0.32 +0.6 884,040 + Atu0893 0.38 -0.4 884,119 - Atu0893 0.45 -0.9 884,188 + Atu0893 0.51 -0.5 884,257 + Atu0893 0.58 +1.0 884,257 + Atu0893 0.58 +0.3 884,319 + Atu0893 0.63 -0.2 884,398 - Atu0893 0.70 +0.4 884,587 - Atu0893 0.88 +0.9 884,595 - Atu0893 0.88 -1.0 884,599 + Atu0893 0.89 +1.1 884,607 - Atu0893 0.89 -0.4 884,607 - Atu0893 0.89 -2.0 884,623 + +0.9 884,623 + +1.0 884,629 - -0.1 884,720 - +0.6 884,801 + +1.5 884,809 - Atu0894 0.10 +0.8 884,893 - Atu0894 0.20 +0.2 884,952 + Atu0894 0.26 +1.2 885,098 - Atu0894 0.42 +3.2 885,122 - Atu0894 0.45 +0.1 885,171 + Atu0894 0.50 -0.7 885,502 + Atu0894 0.87 +1.0 885,568 - +0.2 885,607 + +0.3 885,669 - +0.4 885,683 - -0.0 885,684 + +0.4 885,775 + -0.0 885,806 - -0.4 885,829 - -0.7 885,996 - Atu0895 0.13 -0.7 886,002 - Atu0895 0.14 +0.2 886,191 + Atu0895 0.32 -0.2 886,345 - Atu0895 0.47 +0.2 886,346 + Atu0895 0.48 -0.3 886,559 + Atu0895 0.69 -0.2
Or see this region's nucleotide sequence