Experiment: R2A with nitrite 9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0316 and Atu0317 overlap by 4 nucleotides Atu0317 and Atu0318 are separated by 7 nucleotides
Atu0316: Atu0316 - DNA/pantothenate metabolism flavoprotein, at 309,110 to 310,315
Atu0316
Atu0317: Atu0317 - hypothetical protein, at 310,312 to 310,686
Atu0317
Atu0318: Atu0318 - hypothetical protein, at 310,694 to 311,608
Atu0318
Position (kb) 310
311 Strain fitness (log2 ratio) -1
0
1 at 310.397 kb on + strand, within Atu0317 at 310.456 kb on + strand, within Atu0317 at 310.579 kb on + strand, within Atu0317 at 310.601 kb on + strand, within Atu0317 at 310.604 kb on + strand, within Atu0317 at 310.604 kb on + strand, within Atu0317 at 310.612 kb on - strand, within Atu0317 at 310.670 kb on - strand at 310.748 kb on + strand at 310.772 kb on + strand at 310.810 kb on + strand, within Atu0318 at 311.017 kb on + strand, within Atu0318 at 311.056 kb on - strand, within Atu0318 at 311.061 kb on + strand, within Atu0318 at 311.121 kb on + strand, within Atu0318 at 311.149 kb on + strand, within Atu0318 at 311.149 kb on + strand, within Atu0318 at 311.196 kb on + strand, within Atu0318 at 311.196 kb on + strand, within Atu0318 at 311.199 kb on + strand, within Atu0318 at 311.204 kb on - strand, within Atu0318 at 311.228 kb on - strand, within Atu0318 at 311.325 kb on - strand, within Atu0318 at 311.398 kb on - strand, within Atu0318 at 311.417 kb on - strand, within Atu0318 at 311.459 kb on + strand, within Atu0318 at 311.459 kb on + strand, within Atu0318 at 311.474 kb on + strand, within Atu0318 at 311.658 kb on - strand at 311.671 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrite 9 mM remove 310,397 + Atu0317 0.23 -1.3 310,456 + Atu0317 0.38 -0.5 310,579 + Atu0317 0.71 +0.3 310,601 + Atu0317 0.77 +0.1 310,604 + Atu0317 0.78 -0.1 310,604 + Atu0317 0.78 -0.2 310,612 - Atu0317 0.80 -0.2 310,670 - -0.2 310,748 + +0.0 310,772 + -0.6 310,810 + Atu0318 0.13 -1.7 311,017 + Atu0318 0.35 -0.2 311,056 - Atu0318 0.40 -1.0 311,061 + Atu0318 0.40 -0.2 311,121 + Atu0318 0.47 -0.2 311,149 + Atu0318 0.50 +0.0 311,149 + Atu0318 0.50 +0.6 311,196 + Atu0318 0.55 +0.2 311,196 + Atu0318 0.55 -0.4 311,199 + Atu0318 0.55 +0.5 311,204 - Atu0318 0.56 +0.4 311,228 - Atu0318 0.58 +0.1 311,325 - Atu0318 0.69 -0.1 311,398 - Atu0318 0.77 +0.3 311,417 - Atu0318 0.79 +0.4 311,459 + Atu0318 0.84 +1.2 311,459 + Atu0318 0.84 -0.2 311,474 + Atu0318 0.85 -0.4 311,658 - +1.2 311,671 - +0.2
Or see this region's nucleotide sequence